DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdicA and Dync2i1

DIOPT Version :10

Sequence 1:NP_001303576.1 Gene:SdicA / 26067074 FlyBaseID:FBgn0283432 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001420922.1 Gene:Dync2i1 / 314523 RGDID:1306493 Length:1037 Species:Rattus norvegicus


Alignment Length:607 Identity:121/607 - (19%)
Similarity:215/607 - (35%) Gaps:158/607 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 TYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQN 76
            |:|.|.   ..|:|  .|::...|...|.    |||.....    |.|.:..|.|.:|.|:.   
  Rat   485 TFSLLD---LPPVN--EYDMYIRNFGKKN----TKQAYVQY----NEDNVERDIQTEDIETR--- 533

  Fly    77 LGNGFTSKLPPGYLTHGLPTVKD-----VAPAI-TPLEIKKETEVKKEVNELSEEQKQMIILSEN 135
              ..:|.....|.:..|....||     |.|.| ||                            .
  Rat   534 --EVWTQHPGEGTVVSGGSEEKDFSDVTVVPKIDTP----------------------------R 568

  Fly   136 FQRFVVRAGRVIERALSENVDIYTDYIGGGDS-------EEANDERSHARLSLNRVFYDERWSKN 193
            ...|:..|.:|:...|.|      |.:..|.|       :..|...|.::|:.:..|...|  |.
  Rat   569 LSNFLRAACQVVAVLLEE------DRLAAGPSWIPRAQDKALNISDSSSQLNTSLPFLQSR--KV 625

  Fly   194 RCITSMDWSTHFPELVVGSYHNNEESPNEPD----GVVMVWNTKFKKSTPEDVFHCQSAVMSTCF 254
            .|:    .::......|.|.|:..|....|.    .::.||:. ::.|.|:.|..|:|.|...||
  Rat   626 SCL----HASRVQRQTVVSVHDLPEKAFAPSLDSRHLLCVWDI-WQPSGPQKVLICESKVTCCCF 685

  Fly   255 AKFNPNLILGGTYSGQIVLWDNR-------------------------------VQKRTPIQR-T 287
            :.....|:..||..|.:|:||.|                               |..|:|:|. .
  Rat   686 SPLKAFLLFAGTVHGSVVVWDLREDSRIHHYVRLSSCFWAFRTPTFSTDGILTSVNHRSPLQAIE 750

  Fly   288 PLSAAAHTHPVYCLQMVGTQN-----AHNVISISSDGKLCSW------SLDMLSQPQDTLELQQR 341
            |::.:|:....:.|....||.     :.::.|:...|.|..|      ..|:.....|...:...
  Rat   751 PVATSAYKKQSFVLSPFSTQEEMAGLSFHIASLDESGVLNVWVVVELPKADISGSMSDLGLIPGG 815

  Fly   342 QSKAIAIT----------------------SMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNE 384
            :.|.:..|                      |:.|..::.|..|:|::.|.:..::|...|.. .:
  Rat   816 RIKLVHSTVIQLGHSLSHKDGELWGSTQTLSVKFLPSDPNHFVVGTDMGLISHSTRQDWRVS-PK 879

  Fly   385 VYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSD--YVMDVAWS 447
            |::.....:..|..:....||....:||....|.:|:|..|...:|:..:::::.  .|..:.||
  Rat   880 VFKPQQHGVRPIKVNVIDFSPFEETVFLAGCSDGSIRLHQLTSERPIMQWDNSTSGRSVTSLQWS 944

  Fly   448 PVHPALFAAVDGSGRLDLWNLNQDTEVPIA----------SIVVAGAPALNRVSWTPSGLHVCIG 502
            |..||:|...|.:.|:.:|:|.::...|:|          ::.:.|.|.....|:    :.:.:.
  Rat   945 PTRPAVFLVQDDASRIYVWDLLENDLGPVAQQPISPDKLVAMTIVGEPEKTSGSF----VALVLA 1005

  Fly   503 DEAGKLYVYDVAENLAQPSRDE 524
            ..:|.:.:.::......|:.||
  Rat  1006 RTSGTVDIQNLKRRWTTPAADE 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdicANP_001303576.1 Dynein_IC2 21..51 CDD:463291 8/29 (28%)
WD40 196..512 CDD:475233 76/396 (19%)
WD40 repeat 196..245 CDD:293791 10/52 (19%)
WD40 repeat 251..289 CDD:293791 14/69 (20%)
WD40 repeat 298..337 CDD:293791 9/49 (18%)
WD40 repeat 349..435 CDD:293791 20/107 (19%)
WD40 repeat 441..479 CDD:293791 13/47 (28%)
WD40 repeat 487..513 CDD:293791 2/25 (8%)
Dync2i1NP_001420922.1 PTZ00121 <90..430 CDD:173412
WD40 580..965 CDD:441893 81/398 (20%)
WD40 repeat 680..709 CDD:293791 10/28 (36%)
WD40 repeat 714..757 CDD:293791 5/42 (12%)
WD40 repeat 762..803 CDD:293791 8/40 (20%)
WD40 repeat 844..885 CDD:293791 9/41 (22%)
WD40 repeat 893..926 CDD:293791 8/32 (25%)
WD40 repeat 938..963 CDD:293791 9/24 (38%)
Blue background indicates that the domain is not in the aligned region.

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