DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmc and tmc4

DIOPT Version :9

Sequence 1:NP_001303362.1 Gene:Tmc / 26067066 FlyBaseID:FBgn0267796 Length:2036 Species:Drosophila melanogaster
Sequence 2:XP_002664983.1 Gene:tmc4 / 100333974 ZFINID:ZDB-GENE-030131-7489 Length:732 Species:Danio rerio


Alignment Length:753 Identity:164/753 - (21%)
Similarity:282/753 - (37%) Gaps:172/753 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 LQPWPIRKKLK-LVRQAKTYVARHEGALQERFAMSRSTRDLWARFKILMAARWRHWKRETASFLT 325
            |:..|:...|| .|||.:          |.|..:..|:   |   .|..:..:|.:.....:.|:
Zfish    64 LRELPLHMSLKRAVRQVQ----------QMRVPVVSSS---W---NIKHSQTFRRFCEVAKNILS 112

  Fly   326 VLIPWELRIKEIESHFGSGVASYFTFLRWLMWVNIMIAIPLVAFVIGP-------EYFATKH--- 380
            ..:.|:..|:.|..|||.||.|||.|||:|:.:|.:.::.:.|||:.|       .:.:|.:   
Zfish   113 YFVLWKRGIQRIGGHFGGGVQSYFLFLRFLVILNFLSSLLIAAFVLIPSIVFRSLNFNSTSNITI 177

  Fly   381 ---------GETDPRKRMSDPEARVAGNLFTFWEF-------EGYLKYSPMFYGYYSSTSGISTS 429
                     .:.||:     |:|     |..|:.:       .|:::||.:|||||::|. |.:.
Zfish   178 VNTTGLETCMQYDPK-----PDA-----LMVFFNYFLDLVSGTGFMEYSYLFYGYYNNTM-IESD 231

  Fly   430 G--YKLPLAYFLTAVLVYIYSFVATLRKMAENSR---NSKLSSKDDECVFSWKLFTGWDFMIGHA 489
            |  |.:||||.|||...:::.|...:.:|...:|   .:...:....|:.   :|||||..:...
Zfish   232 GFSYNIPLAYLLTAAFYFLFCFFCIIIRMGGTARVVVETGAGAAGGYCML---VFTGWDHGLQGD 293

  Fly   490 ETAHNRIASVVVGFKEALLEEAEKKKD-----NRNWRVILQRILVNILVMGLL-----GLSGATV 544
            .....:..:|....:..|.||..|||.     .:...:...||.:|::|:.|:     |::.|| 
Zfish   294 RAVKLKQNNVRYRLQVDLEEERLKKKAASLTLGQTVSLYALRIFLNLIVLTLIVATFFGIAKAT- 357

  Fly   545 VLLVNHSEDLAKHDNWLSRNAVNVTMTLLSFFLPMIFEALGLFENWHPRQQLRLQLARIMILNML 609
              ..:.|.........|.:...::.:|..:|.:|::.:.:.|.|.:.|...:.|.|.|.:.|.::
Zfish   358 --QFSQSMKTTGFTGLLLQYLPSMVITASNFVVPLLCDKIALLEKYSPSTTVILALLRAVFLRLV 420

  Fly   610 NLYSLMFSFIYKINSKEKPLQMLKLENETNTMELK------NLLSSIEALRAMTPTTSLYGESTS 668
            :|..|:::...:|..|          .|..:.:.|      |.....|        |.:..|...
Zfish   421 SLGVLLYTLWEQITCK----------GEIGSDDCKLCGYYYNQYKCWE--------TRVGQEMYK 467

  Fly   669 DGLFDDSTSTATWGEDGGGLFSTTAAAALISTTVQRLKCYNMTVKCSKL---RRNIISGKHLATT 730
            ..|||               |..|.|..::....:|:...:.:.|.|:|   :..:::...||..
Zfish   468 LTLFD---------------FLITVATLILVEFPRRIVVDHCSCKLSQLVGRQEFLVAPNVLALV 517

  Fly   731 LMVLNLTTPAMVPPTLPTTLPTTFPTTLPTTL------PTTLPTALPTTLPTTLPTT-----LPS 784
            .....:.|.|:..|.||      |..||...:      .|......|.|......|:     |..
Zfish   518 YSQTVVWTGALFCPLLP------FINTLKFVIFYYCKKITLFQNCQPATRNFRSTTSNFFFLLVL 576

  Fly   785 TLATTTATTSSIWSTTE-----ETSPTTTTTSPWTTLPPSTTTTEATTTTERATT--TTEATSTT 842
            ......|:...::|..:     ...|.....:.|..:|.:   ....:||.||..  ......:.
Zfish   577 LFGWMLASVVLLYSVAKIHPSYGCGPFRLDPTMWDAVPQA---VNMLSTTSRAFLFYIGSQKCSI 638

  Fly   843 TLKITTAEINSTLSDTTKPLGKSI-------------------DTEIPNSTTNSATLSTIPATLN 888
            .|.|.:..:...:|..|...|||:                   ..|..|:|...|...  |..||
Zfish   639 PLFIFSCILLCYVSALTSVHGKSVALLKSQCALEQRDKQFLIRQIEELNATMQKAEHE--PKLLN 701

  Fly   889 TTNLPLNSTTKLTTTTSTEKPQGEDNFIYTTGEDEGSY 926
            |.|.|...      |.:|:..| .:|:.:...||...|
Zfish   702 TENEPFQH------TAATQWNQ-HNNYAFDPDEDPRPY 732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TmcNP_001303362.1 TMC 1242..1348 CDD:285101
DUF612 <1447..1844 CDD:282585
tmc4XP_002664983.1 TMC 461..561 CDD:285101 23/120 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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