DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmc and tmc6a

DIOPT Version :10

Sequence 1:NP_001303362.1 Gene:Tmc / 26067066 FlyBaseID:FBgn0267796 Length:2036 Species:Drosophila melanogaster
Sequence 2:XP_073801264.1 Gene:tmc6a / 100149241 ZFINID:ZDB-GENE-081114-3 Length:792 Species:Danio rerio


Alignment Length:542 Identity:128/542 - (23%)
Similarity:212/542 - (39%) Gaps:131/542 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 RRAASQ-------EDHRSYELN---------DFPLQNQSSDAESCHQEPHFAH--QRSPGIGFDE 168
            :.|||:       ||...:||.         .|.|.:.:.|.|:.:.||...|  |||       
Zfish    66 KMAASRIMETIPGEDGDLFELEAVWRPNREVRFDLTHANEDIEAHYNEPKHRHTLQRS------- 123

  Fly   169 DGGGGDIDDEESYTISVSAIMQRRASVRGYRGKRGSRSSRRASSPMDHVLDSVERRRSSVYTTSS 233
                       |::.|...::....|       |..:.::.|:........:.:||..|:.|...
Zfish   124 -----------SWSSSTQKVLSSMPS-------RSMKWNQAAAVNQSRSTKTQQRRPLSICTEDQ 170

  Fly   234 EEGTNQESTQEQIFENIRLHKEVIQSVKLQPWPIRKKLKLVRQAKTYVARHEGALQERFAMSRST 298
            :..|:|:...:.         |:::  |||...:.:..:|:|:....|:.           .|..
Zfish   171 DVFTDQDDYVDD---------ELLK--KLQGLSVGESAQLLREMPLSVSE-----------KRQM 213

  Fly   299 RDL---WARFKILMAAR-----W----------RHWKRETASFLTVLIPWELRIKEIESHFGSGV 345
            |:|   |...|...|.|     |          ..|.....|    |..|:...|.|.:|||.||
Zfish   214 RELVVCWESGKPRSANRPLCLYWFQTCLKKVVHSDWSGRQKS----LQLWQKVFKNISAHFGMGV 274

  Fly   346 ASYFTFLRWLMWVNIMIAIPLVAFVIGPEYFATKHGETDPRKRMSDP--------EARVAGNLFT 402
            .|||.|||.|:..|:::.:....|::.|:              :|:|        ||....||  
Zfish   275 LSYFVFLRRLLLFNLLLMLINGLFLLLPQ--------------LSNPSSSTRTSSEAEHKSNL-- 323

  Fly   403 FWEFE--GYLKYSPMFYGYYSSTSGIST---SGYKLPLAYFLTAVLVYIYSFVATLRKMAENSRN 462
             |...  |.|..|.||||:||.....|:   ..|.:||||..|.......:.|..:..|::....
Zfish   324 -WMLTGMGILTDSVMFYGHYSDCQNGSSECFENYNIPLAYIFTFGTGMFVTCVKLVYNMSKAFGK 387

  Fly   463 SKLSSKDDECVFSWKLFTGWDFMIGHAETAHNRIASVVVGFKEALLEEAEKKKDNRNWRVILQRI 527
            |:.|:.....||  |:|..|||.:....:...:..::....|| :|.|...||..||...:|:.:
Zfish   388 SQSSTNTRSLVF--KVFCSWDFKVYKKRSVRLQSVNICTQLKE-MLSELSCKKQKRNLCSMLRWL 449

  Fly   528 LVNILVMGLLGLSGATVVLLVNHSEDLAKHDNWLSRNAVNVTMTLL-------SFFLPMIFEALG 585
            .:::||..:..|.....:..||:.. |.:..|  |.:|..|.:.:|       |..||::|:.|.
Zfish   450 SLHLLVWSICLLCMGACIFAVNYFH-LVRPIN--SHDAEPVYLLILPLAVSAYSRLLPVLFDMLS 511

  Fly   586 LFENWH-PRQQLRLQLARIMIL 606
            ..|.:: |..::.:.:||.::|
Zfish   512 RVEQYNSPDIRIYVSIARNLLL 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TmcNP_001303362.1 TMC 1237..1352 CDD:462275
tmc6aXP_073801264.1 None
Blue background indicates that the domain is not in the aligned region.

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