DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmc and LOC100149241

DIOPT Version :9

Sequence 1:NP_001303362.1 Gene:Tmc / 26067066 FlyBaseID:FBgn0267796 Length:2036 Species:Drosophila melanogaster
Sequence 2:XP_017210326.1 Gene:LOC100149241 / 100149241 -ID:- Length:726 Species:Danio rerio


Alignment Length:529 Identity:125/529 - (23%)
Similarity:207/529 - (39%) Gaps:124/529 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 EDHRSYELN---------DFPLQNQSSDAESCHQEPHFAH--QRSPGIGFDEDGGGGDIDDEESY 181
            ||...:||.         .|.|.:.:.|.|:.:.||...|  |||                  |:
Zfish    13 EDGDLFELEAVWRPNREVRFDLTHANEDIEAHYNEPKHRHTLQRS------------------SW 59

  Fly   182 TISVSAIMQRRASVRGYRGKRGSRSSRRASSPMDHVLDSVERRRSSVYTTSSEEGTNQESTQEQI 246
            :.|...::....|       |..:.::.|:........:.:||..|:.|...:..|:|:...:. 
Zfish    60 SSSTQKVLSSMPS-------RSMKWNQAAAVNQSRSTKTQQRRPLSICTEDQDVFTDQDDYVDD- 116

  Fly   247 FENIRLHKEVIQSVKLQPWPIRKKLKLVRQAKTYVARHEGALQERFAMSRSTRDL---WARFKIL 308
                    |:::  |||...:.:..:|:|:....|:.           .|..|:|   |...|..
Zfish   117 --------ELLK--KLQGLSVGESAQLLREMPLSVSE-----------KRQMRELVVCWESGKPR 160

  Fly   309 MAAR-----W----------RHWKRETASFLTVLIPWELRIKEIESHFGSGVASYFTFLRWLMWV 358
            .|.|     |          ..|.....|    |..|:...|.|.:|||.||.|||.|||.|:..
Zfish   161 SANRPLCLYWFQTCLKKVVHSDWSGRQKS----LQLWQKVFKNISAHFGMGVLSYFVFLRRLLLF 221

  Fly   359 NIMIAIPLVAFVIGPEYFATKHGETDPRKRMSDP--------EARVAGNLFTFWEFE--GYLKYS 413
            |:::.:....|::.|:              :|:|        ||....||   |...  |.|..|
Zfish   222 NLLLMLINGLFLLLPQ--------------LSNPSSSTRTSSEAEHKSNL---WMLTGMGILTDS 269

  Fly   414 PMFYGYYSSTSGIST---SGYKLPLAYFLTAVLVYIYSFVATLRKMAENSRNSKLSSKDDECVFS 475
            .||||:||.....|:   ..|.:||||..|.......:.|..:..|::....|:.|:.....|| 
Zfish   270 VMFYGHYSDCQNGSSECFENYNIPLAYIFTFGTGMFVTCVKLVYNMSKAFGKSQSSTNTRSLVF- 333

  Fly   476 WKLFTGWDFMIGHAETAHNRIASVVVGFKEALLEEAEKKKDNRNWRVILQRILVNILVMGLLGLS 540
             |:|..|||.:....:...:..::....|| :|.|...||..||...:|:.:.:::||..:..|.
Zfish   334 -KVFCSWDFKVYKKRSVRLQSVNICTQLKE-MLSELSCKKQKRNLCSMLRWLSLHLLVWSICLLC 396

  Fly   541 GATVVLLVNHSEDLAKHDNWLSRNAVNVTMTLL-------SFFLPMIFEALGLFENWH-PRQQLR 597
            ....:..||:.. |.:..|  |.:|..|.:.:|       |..||::|:.|...|.:: |..::.
Zfish   397 MGACIFAVNYFH-LVRPIN--SHDAEPVYLLILPLAVSAYSRLLPVLFDMLSRVEQYNSPDIRIY 458

  Fly   598 LQLARIMIL 606
            :.:||.::|
Zfish   459 VSIARNLLL 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TmcNP_001303362.1 TMC 1242..1348 CDD:285101
DUF612 <1447..1844 CDD:282585
LOC100149241XP_017210326.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595188
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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