DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmc and tmc8

DIOPT Version :10

Sequence 1:NP_001303362.1 Gene:Tmc / 26067066 FlyBaseID:FBgn0267796 Length:2036 Species:Drosophila melanogaster
Sequence 2:XP_009304608.2 Gene:tmc8 / 100004462 ZFINID:ZDB-GENE-081114-2 Length:684 Species:Danio rerio


Alignment Length:485 Identity:120/485 - (24%)
Similarity:215/485 - (44%) Gaps:69/485 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 DEESYTISVSAIMQRRASVRGYRGKRGSRSSRRASSPMDHVLDSVERRRSSVYTTSSEEGTNQES 241
            :.|..||:    .||..|...|.....|.|.....:.:..:|.|.:..|.:    .:::.|:.::
Zfish     2 EREDKTIT----FQRLLSDESYSSDLSSDSCEYYQTEIFGLLPSTQTHRRA----HADDITHDQN 58

  Fly   242 TQEQIFENIRLHKEVIQSVKLQPW----PIRKKLKLVRQAKTYVARHEGALQERFAMSRSTRDLW 302
                  |.:||.:..        |    |:| .|.:..|.|..: |....||:|   |..:.|.|
Zfish    59 ------ERLRLDRIC--------WNPNVPLR-NLPVCLQDKRDI-RDRQHLQKR---SIGSWDAW 104

  Fly   303 ARFKILMAARWRHWKRETASFLTVLIPWELRIKEIESHFGSGVASYFTFLRWLMWVNIMIAIPLV 367
            .|.:  ...| |..|.:....::.|:||...|..||..||.||.:||.|||:|:.:|::..:.:.
Zfish   105 RRSQ--QTTR-RRLKEQVGRAVSGLLPWRHMIHRIEGQFGVGVKAYFVFLRYLLGLNLLYCVIIG 166

  Fly   368 AFVIGPEYFATKHGETDPRKRMSDPE-ARVAGNLFTFWEFEGYLKYSPMFYGYYSSTSGISTSGY 431
            ..|:.|.  ....||:   ....:|: :.:..::|.   ..|.|:.:.:|:.:|:..| ::.:..
Zfish   167 GSVLVPT--LVYRGES---TETQNPDWSSLYKDMFV---GSGVLEKTAVFHSFYTRGS-LNGACL 222

  Fly   432 KLPLAYFLTAVLVYIYSFVATLRKMAENSRNSKLSSKDDECVFSWKLFTGWDFMIGHAETA---- 492
            ..||.:.|..|.:...|.:..:|:.....::|.::.|......|:|:|:||||.|...:.|    
Zfish   223 NTPLLFLLGMVSIIFLSIIMLVRRTVVGYKHSWITGKHFSSNLSYKVFSGWDFSIQSPQAASLKQ 287

  Fly   493 ---HNRIASVVVGFKEALLEEAEKKKDNRNW-RVILQRILVNILVMGLLGLSGATVVLLVNHSED 553
               .|.:.   :..:|.......|::....| |::|.|||:|:.|:.|  |:|:  .:|:.::..
Zfish   288 NFTRNELK---MDLEEQAFHARVKQRTLTQWVRLVLFRILLNLAVLCL--LTGS--FMLIYYAIH 345

  Fly   554 LAKHDNWLSRNAV------NVTMTLLSFFLPMIFEALGLFENWHPRQQLRLQLARIMILNMLNLY 612
            |.:.....|...|      .:||||::..||.||..:..||::....||.|.|.|.:.|.:.:|.
Zfish   346 LQQSCTDESTECVMLKYLPPITMTLINIALPRIFTKISEFEDYSLTIQLNLTLIRSIFLKLASLS 410

  Fly   613 SLMFSFIYKINSKEKPLQMLKLENETNTME 642
            ..:|.||    ..:|..|..:...:.||::
Zfish   411 IYLFFFI----CADKDYQFCQFGQKKNTLK 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TmcNP_001303362.1 TMC 1237..1352 CDD:462275
tmc8XP_009304608.2 None
Blue background indicates that the domain is not in the aligned region.

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