DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-lambda and Chl1

DIOPT Version :9

Sequence 1:NP_001334747.1 Gene:DIP-lambda / 26067049 FlyBaseID:FBgn0267428 Length:548 Species:Drosophila melanogaster
Sequence 2:XP_038964701.1 Gene:Chl1 / 89828 RGDID:620122 Length:1224 Species:Rattus norvegicus


Alignment Length:468 Identity:105/468 - (22%)
Similarity:166/468 - (35%) Gaps:110/468 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 CSIAFILIKAIT------ITKCHAVAHIHGKGESEEID----------------PQFLAKLSNTT 60
            |..||..::.|.      :| .:::.|.:....|.||.                |..:...|:.|
  Rat   203 CFAAFPKLRTIVQKMPMKLT-VNSLKHANDSSSSTEISNQANSIKQRKPKLLLPPAQIGSASSKT 266

  Fly    61 VPIGRDISFTCVVDNLGHYRVAWIKSDS-----KAILGIHTHMVSLNPRLSVTHNGHNTWKLHIS 120
            |..|..:...|..:.|...::.|.|..|     :|.:.||..                  .|.|.
  Rat   267 VLKGDTLLLECFAEGLPTPQIEWSKLGSELPKGRATIEIHEK------------------TLKIE 313

  Fly   121 RVQINDSGSYMCQVNTDPMKSLSGYLDVVVPPDILNHP--EHNPEDGVCQEGGSISLMCSVTGVP 183
            .|...|.|:|.|..|....|:...:..:|..|     |  :..|:..|...|.:..|:|...|.|
  Rat   314 NVSYQDRGNYRCTANNLLGKASHDFHVIVEEP-----PRWKKKPQSAVYSTGSNGILLCEAEGEP 373

  Fly   184 RPKVLWRREAGKEIILRTDGRDKTGFKSVEGERLVLTNVQRSDMGGYNCIASNGIPPSVSKRFNV 248
            :|.:.||...     |..:.....|......| :..||:|.:....|.|.||| |..::....|:
  Rat   374 QPTIKWRVNG-----LPIENHPFPGDVMFPRE-ISFTNLQPNHTAVYQCEASN-IHGTILANANI 431

  Fly   249 -YVNFSPTVKAISQ-----LVGAPVEREVTLECIVEVFPKPLNGWYRSEGNIKLHNGNKYNISEE 307
             .|:..|.::..::     :||    ....|.|.....||....|..::....|..|.       
  Rat   432 DVVDVVPLIQTKNEENYETVVG----YSAFLHCEYFASPKATVVWEVADETHPLEGGR------- 485

  Fly   308 VINIYTWHLN--LTIRHLTKSDFGTYSCSSVNALGKSESLIRLQELRLPPKLTTTP-TPHMQTTG 369
                |..|.|  |.|...|:.|.|:|||...|.:||:.....| ::|...||...| .|.:    
  Rat   486 ----YHTHENGTLEIERTTEEDAGSYSCWVDNTMGKAVITANL-DIRNATKLRVFPKNPRI---- 541

  Fly   370 KSRRKHPASHKKGLNEVLRFQ-----ETHFANQIQQENEDHNEGFDLLKFTNSENSNIVLESGHI 429
                  |.||      ||...     ::|..:.::.......|.|::   ..:|:..||::..::
  Rat   542 ------PKSH------VLELYCESQCDSHLKHSLKLSWSKDGEAFEM---NGTEDGRIVIDGANL 591

  Fly   430 N-SMINKEDVNIY 441
            . |.|:.||..||
  Rat   592 TISNISGEDQGIY 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-lambdaNP_001334747.1 None
Chl1XP_038964701.1 Ig 34..125 CDD:416386
Ig strand A 34..38 CDD:409353
Ig strand A' 43..47 CDD:409353
Ig strand B 52..59 CDD:409353
Ig strand C 65..70 CDD:409353
Ig strand C' 73..75 CDD:409353
Ig strand D 81..84 CDD:409353
Ig strand E 89..93 CDD:409353
Ig strand F 104..112 CDD:409353
Ig strand G 115..125 CDD:409353
IgI_2_L1-CAM_like 134..224 CDD:409432 5/21 (24%)
Ig strand B 148..152 CDD:409432
Ig strand C 162..166 CDD:409432
Ig strand E 185..189 CDD:409432
Ig strand F 200..205 CDD:409432 1/1 (100%)
Ig strand G 216..219 CDD:409432 0/2 (0%)
Ig 261..343 CDD:416386 21/99 (21%)
Ig strand B 273..277 CDD:409353 0/3 (0%)
Ig strand C 286..290 CDD:409353 0/3 (0%)
Ig strand E 308..312 CDD:409353 1/21 (5%)
Ig strand F 322..327 CDD:409353 2/4 (50%)
Ig strand G 335..338 CDD:409353 0/2 (0%)
Ig4_L1-NrCAM_like 347..434 CDD:409367 23/93 (25%)
Ig strand B 363..367 CDD:409367 1/3 (33%)
Ig strand C 376..380 CDD:409367 0/3 (0%)
Ig strand E 399..403 CDD:409367 1/4 (25%)
Ig strand F 413..418 CDD:409367 2/4 (50%)
Ig strand G 426..429 CDD:409367 0/2 (0%)
Ig 447..524 CDD:416386 23/91 (25%)
Ig strand A' 447..451 CDD:409353 0/3 (0%)
Ig strand B 454..463 CDD:409353 2/8 (25%)
Ig strand C 469..474 CDD:409353 1/4 (25%)
Ig strand C' 477..480 CDD:409353 0/2 (0%)
Ig strand D 485..490 CDD:409353 1/15 (7%)
Ig strand E 491..498 CDD:409353 3/6 (50%)
Ig strand F 505..513 CDD:409353 4/7 (57%)
Ig strand G 516..524 CDD:409353 2/7 (29%)
Ig 528..627 CDD:416386 21/96 (22%)
Ig strand A 528..534 CDD:409353 2/5 (40%)
Ig strand A' 537..542 CDD:409353 1/14 (7%)
Ig strand B 545..553 CDD:409353 3/13 (23%)
Ig strand C 564..568 CDD:409353 0/3 (0%)
Ig strand D 583..586 CDD:409353 1/2 (50%)
Ig strand E 589..593 CDD:409353 0/3 (0%)
Ig strand F 602..609 CDD:409353 2/3 (67%)
Ig strand G 616..620 CDD:409353
FN3 627..716 CDD:238020
fn3 730..811 CDD:394996
FN3 832..926 CDD:238020
FN3 931..1026 CDD:238020
Bravo_FIGEY 1120..1201 CDD:404722
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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