DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-lambda and wrapper

DIOPT Version :9

Sequence 1:NP_001334747.1 Gene:DIP-lambda / 26067049 FlyBaseID:FBgn0267428 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster


Alignment Length:542 Identity:121/542 - (22%)
Similarity:195/542 - (35%) Gaps:136/542 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 CSIAFILIKAITITKCHAVAHIHGKGESEE---IDPQFLAKLSNTTVPIGRDISFTCVVDNLGHY 79
            ||:...|:.|:.:.:..|....:...|:.:   ..|..:....|.||.:      .|.::....|
  Fly     6 CSVVRCLLAALILGQVQAELDFNNDLENSQKFKSIPTTVKTYENDTVQL------PCTLNTPFRY 64

  Fly    80 RVAWIKSDSKAILGIHTHMVSLNP--RLSVTHNGHNTWKLHISRVQINDSGSYMCQVNTDPMKSL 142
             |.|.:.|...:...|.   .|.|  |:.:..||    .|.::.||.:|:|.|.|::|:|     
  Fly    65 -VRWHRDDVALVDSRHP---ELPPPDRIMLWPNG----SLQVANVQSSDTGDYYCEMNSD----- 116

  Fly   143 SGY------LDVVVPPDILNHPEHNPEDGVCQEGGSISLMCSVTGVPRPKVLWRREAGKEIILRT 201
            ||:      ::|.:.|.:|..|....|..:   |....::|...|||:|.:.||.. |..|    
  Fly   117 SGHVVQQHAIEVQLAPQVLIEPSDLTEQRI---GAIFEVVCEAQGVPQPVITWRLN-GNVI---- 173

  Fly   202 DGRDKTGFKSVEGERLVLTNVQRSDMGGYNCIASNGI-PPSVSKRFNVYVN--FSPTVKAISQLV 263
            ..:..||.:    :.|:|....|:..|...|:||||: .|:|:   |||::  |||.|.....:|
  Fly   174 QPQSNTGNR----QSLILEIKSRNQAGLIECVASNGVGEPAVA---NVYLHVLFSPEVSIPQPVV 231

  Fly   264 GAPVEREVTLECIVEVFPKPLNGWYRSEGNIKLHNGNKYNISEEVINIYTWHLNLTIRHL----- 323
            ...:.....||||||..|.....|:.....:.|...:..:.||...|....|....:||:     
  Fly   232 YTKLGSRAHLECIVEAAPAATVKWFHHGLPVALGAHSTTHESELQTNRSVDHYVNAVRHMLVVKS 296

  Fly   324 -TKSDFGTYSCSSVNALGKSESLIRLQELRLPPKLTTTPTPHMQTTGKSRRKHPASH-----KKG 382
             ..:|.|.|.|.:.|.:......:.|....:|......|.....|          ||     .:.
  Fly   297 VRNADMGQYECRASNQISVKSGSVELTGRPMPCLFKINPGTQSST----------SHVLVWQTES 351

  Fly   383 LNEVLRFQETHFANQIQQENEDHNEGFDLLKFTNSENSNIVLESGHINSMINKEDVNIYHPKQYG 447
            |..::.|:                     |||....::|:.                       .
  Fly   352 LLPIMEFK---------------------LKFRQIPSNNVT-----------------------R 372

  Fly   448 QEKTNKPSGTIPSTRTPWIL-----TNAGSQRPALTSYATVALITSFWLFFWRVFHSLDWDAIRV 507
            |.:||....|||:..|..::     |..|.|..:|...:.:|.            :|..|     
  Fly   373 QVRTNWTELTIPAQATNGLIYITTYTLHGLQPASLYEVSVLAR------------NSFGW----- 420

  Fly   508 SSVVHHVVVFKRRSYFEAPNYA 529
             |....:|.|......|.|||:
  Fly   421 -SDNSKIVRFATGGEVELPNYS 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-lambdaNP_001334747.1 None
wrapperNP_477404.1 Ig 41..124 CDD:299845 26/101 (26%)
IG_like 41..118 CDD:214653 24/95 (25%)
IG_like 145..218 CDD:214653 26/87 (30%)
Ig 147..219 CDD:299845 26/83 (31%)
I-set 224..323 CDD:254352 22/98 (22%)
IGc2 236..314 CDD:197706 20/77 (26%)
FN3 339..431 CDD:238020 26/163 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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