DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimB2 and Tnr

DIOPT Version :9

Sequence 1:NP_723857.1 Gene:NimB2 / 260645 FlyBaseID:FBgn0028543 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_037177.2 Gene:Tnr / 25567 RGDID:3886 Length:1358 Species:Rattus norvegicus


Alignment Length:382 Identity:95/382 - (24%)
Similarity:127/382 - (33%) Gaps:136/382 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 ESGWRSYNQSSYGWSTQNQS---NYAWNQQNHVEQGSAGFVRAEVFQPV-----TLPPLYGHYVQ 104
            |.|..|||.||     :.|.   |:.:|....:|...:..:.|...|.|     ||....|.   
  Rat    48 EGGASSYNTSS-----KEQPMVFNHVYNINVPLESLCSSGLEASAEQDVSAEDDTLAEYTGQ--- 104

  Fly   105 PVTPPAHRVQVLDETALFINKTRSAMASGVCYKEVPTASLLRNSRDQFVGNGTTPDMSRIQVCCD 169
               ...|..||.....:.:.|.....||        :|.:|:..            :|||::   
  Rat   105 ---TSDHESQVTFTHKINLPKKACPCAS--------SAQVLQEL------------LSRIEM--- 143

  Fly   170 GYERNPHIYRRCEPICADDCRNGICTAPNTCVCIPGHVRTAEGKCISTCPLGCGNGVCDERNECK 234
             .||...:.|       |.|....|..         ...|.:...:..|. |.|| ...|...|.
  Rat   144 -LEREVSVLR-------DQCNTNCCQE---------SAATGQLDYVPHCS-GHGN-FSFESCGCI 189

  Fly   235 CREGYSLEPETRKYC-QPECKPGCSF-GRCVAPNKCACLDGYRLAADGSCEPVCDS------CEN 291
            |.||:     ..|.| :|.|..|||. |.||               ||.|  :|||      |..
  Rat   190 CNEGW-----FGKNCSEPYCPLGCSSRGVCV---------------DGQC--ICDSEYSGDDCSE 232

  Fly   292 GKCTAPGHCNCNAGYLKLQGRC---EPICSIPCKNGRCIGPDICECASGFEWDRKSAECLPKCDL 353
            .:|..    :|::..|.:.|.|   ||.....|:..||.|                 :|..|.. 
  Rat   233 LRCPT----DCSSRGLCVDGECVCEEPYTGEDCRELRCPG-----------------DCSGKGQ- 275

  Fly   354 PCLNGVCVGNNQCDCKTGYV-RDEHQR---NIC--QPHCPQG---CQNGY----CSA 397
             |.||.|:      |:.||. .|..||   |.|  :.||.:|   |:.||    |||
  Rat   276 -CANGTCL------CQEGYAGEDCSQRRCLNACSGRGHCQEGLCICEEGYQGPDCSA 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimB2NP_723857.1 None
TnrNP_037177.2 exchanger_TraA <190..>328 CDD:411343 54/187 (29%)
EGF_Tenascin 203..231 CDD:376143 13/44 (30%)
fn3 328..398 CDD:394996
fn3 416..496 CDD:394996
fn3 507..586 CDD:394996
FN3 595..679 CDD:238020
fn3 687..766 CDD:394996
fn3 776..855 CDD:394996
fn3 865..944 CDD:394996
fn3 954..1026 CDD:394996
FN3 1042..1127 CDD:238020
FReD 1134..1342 CDD:238040
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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