DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNED1 and Ser

DIOPT Version :10

Sequence 1:XP_011509233.1 Gene:SNED1 / 25992 HGNCID:24696 Length:1437 Species:Homo sapiens
Sequence 2:NP_524527.3 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster


Alignment Length:1119 Identity:265/1119 - (23%)
Similarity:392/1119 - (35%) Gaps:379/1119 - (33%)


- Green bases have known domain annotations that are detailed below.


Human   278 RIDDAQVRVGGCGHTTSVCLALRPCLNGGKCIDDCVTGNPSYTCSCLSGFTGRRCHLDVNECAS- 341
            |..:.:.|.|..|...:.|:....|.:|     .|  ...::.|.|.:.:.|..|..|:|.|.: 
  Fly   300 RPGECECRPGWRGPLCNECMVYPGCKHG-----SC--NGSAWKCVCDTNWGGILCDQDLNFCGTH 357

Human   342 QPCQNGGTCTH-GINSFRCQCPAGFGGPTCETAQSPCDTKECQHGGQC----------------- 388
            :||::||||.: ..:.:||.|..|..|..||..:.||.|:.|::||.|                 
  Fly   358 EPCKHGGTCENTAPDKYRCTCAEGLSGEQCEIVEHPCATRPCRNGGTCTLKTSNRTQAQVYRTSH 422

Human   389 -------------------------QVENGSA--------------------VCVCQAGYTGAAC 408
                                     |..|||:                    .|.|.||:||..|
  Fly   423 GRSNMGRPVRRSSSMRSLDHLRPEGQALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTC 487

Human   409 EMDVDDCSPDPCLNGGSCVDLVGNYTCLCAEPFKGLRCET------------------------- 448
            |:::|:|:..||.:||:|:||:|.:.|.|...:.|..|:.                         
  Fly   488 EINIDECAGGPCEHGGTCIDLIGGFRCECPPEWHGDVCQVDVNECEAPHSAGIAANALLTTTATA 552

Human   449 --GDHPVPDACLSA-------------PCHNGGTCVDADQGYVCECPEGFMGLDCRERVPDDC-- 496
              |.:....|.|:|             ||.|...|.:....:.|.|.||:.|:.|.|.: |||  
  Fly   553 IIGSNLSSTALLAALTSAVASTSLAIGPCINAKECRNQPGSFACICKEGWGGVTCAENL-DDCVG 616

Human   497 ECRNGGRCLG-ANTTLCQCPLGFFGLLCEFEITAMPCNMNTQCPDGGYCMEHGGSYLCVCHTDHN 560
            :||||..|:. .|...|.|..||.|..||.:|.  .| ..:.|.:||.|::..|.:.|:|...::
  Fly   617 QCRNGATCIDLVNDYRCACASGFKGRDCETDID--EC-ATSPCRNGGECVDMVGKFNCICPLGYS 678

Human   561 AS-------HSLPSPCDSDPCFNGGSCDAHDDSYTCECPRGFHGKHCEKARPHLCSSGPCRNG-- 616
            .|       :..||||....|.|      ..:.|.|.||....|||||:.|| |||..||..|  
  Fly   679 GSLCEEAKENCTPSPCLEGHCLN------TPEGYYCHCPPDRAGKHCEQLRP-LCSQPPCNEGCF 736

Human   617 ------------------------------------GTCKEAGGEYHCSCPYRFTGRHCEIGKPD 645
                                                |:|:.:.....|.|....||..|| ...:
  Fly   737 ANVSLATSATTTTTTTTTATTTRKMAKPSGLPCSGHGSCEMSDVGTFCKCHVGHTGTFCE-HNLN 800

Human   646 SCASGPCHNGGTCFHYIGKYKCDCPPGFSGRHCEIAPSPCFRSPCVNGGTC----EDRDTDFFCH 706
            .|:..||.|||.|....|.:.|:|..|::|:.|....:.|:...|.|||||    .|:.....|.
  Fly   801 ECSPNPCRNGGICLDGDGDFTCECMSGWTGKRCSERATGCYAGQCQNGGTCMPGAPDKALQPHCR 865

Human   707 CQAGYMGRRCQAEVDCGPPEEVKHATLRFNGTRLGAVALYACDRGYSLSAPSRIRVCQPHGVWSE 771
            |..|:.|..| ||.                                                   
  Fly   866 CAPGWTGLFC-AEA--------------------------------------------------- 878

Human   772 PPQCLEIDECRSQPCLHGGSCQDRVAGYLCLCSTGYEGAHCELERDECRAHPCRNGGSCRNLPGA 836
                  ||:||.|||.:||:|:.....:.|:|:.|:.|..|.:..:||...||:.|.:|.:..|.
  Fly   879 ------IDQCRGQPCHNGGTCESGAGWFRCVCAQGFSGPDCRINVNECSPQPCQGGATCIDGIGG 937

Human   837 YVCRCPAGFVGVHCETEVDACDSSPCQHG----------------------GRCESGGGAYLCVC 879
            |.|.||.|..|:.||..: :...|.||:.                      ||.|.......|||
  Fly   938 YSCICPPGRHGLRCEILL-SDPKSACQNASNTISPYTALNRSQNWLDIALTGRTEDDENCNACVC 1001

Human   880 ------------------------PESFFGYHCE-------TVSDPCFSSPCGGRGYCLASNGSH 913
                                    ..|.....|:       .:|:.|.||||..||.|.|...|.
  Fly  1002 ENGTSRCTNLWCGLPNCYKVDPLSKSSNLSGVCKQHEVCVPALSETCLSSPCNVRGDCRALEPSR 1066

Human   914 -----------SCTCKVGYTGEDCAKELFPPTALKMERV-------------------------- 941
                       ||........|:||:...   .|.:|||                          
  Fly  1067 RVAPPRLPAKSSCWPNQAVVNENCARLTI---LLALERVGKGASVEGLCSLVRVLLAAQLIKKPA 1128

Human   942 ----EESGV--------------------SISWNPPNGPAARQMLDGYAVTYVSSDGSYRRTDFV 982
                ::.|:                    |...|.|..|.|..:| |..:::...:|..||    
  Fly  1129 STFGQDPGMLMVLCDLKTGTNDTVELTVSSSKLNDPQLPVAVGLL-GELLSFRQLNGIQRR---- 1188

Human   983 DRTRSSHQLQALAAGRAYNISVFSVKRNSNNKNDISRPAVLLARTRPRPVEGFEVTNVTAST-IS 1046
                  .:|:...|..|...|:..||..:....|.|..::|:.     .:.|..:..|..|. ||
  Fly  1189 ------KELELQHAKLAALTSIVEVKLETARVADGSGHSLLIG-----VLCGVFIVLVGFSVFIS 1242

Human  1047 VQWALHRIRHATVSGVRV-----SIRHPEALRDQATDVDRSVDRFTFRALLPGKRYTIQLTTLSG 1106
            :.|. .|:.:.|.||:.:     ::||.|...:...: :.::.|:|    .|.|..|..|...:|
  Fly  1243 LYWK-QRLAYRTSSGMNLTPSLDALRHEEEKSNNLQN-EENLRRYT----NPLKGSTSSLRAATG 1301

Human  1107 LRGEEHPTESLATA 1120
            :....:|...||.:
  Fly  1302 MELSLNPAPELAAS 1315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNED1XP_011509233.1 NIDO 128..284 CDD:214712 1/5 (20%)
EGF_CA 296..332 CDD:238011 7/35 (20%)
EGF_CA 335..371 CDD:238011 14/37 (38%)
EGF_CA 411..447 CDD:238011 13/35 (37%)
EGF_CA 455..488 CDD:238011 12/45 (27%)
EGF_CA 569..601 CDD:238011 10/31 (32%)
EGF_CA 609..640 CDD:238011 10/68 (15%)
EGF_CA 645..679 CDD:238011 12/33 (36%)
EGF_CA <688..717 CDD:238011 11/32 (34%)
CCP 722..775 CDD:153056 0/52 (0%)
EGF_CA 778..813 CDD:238011 14/34 (41%)
EGF_CA 817..851 CDD:238011 13/33 (39%)
EGF_CA 854..889 CDD:238011 10/80 (13%)
fn3 932..1012 CDD:394996 21/129 (16%)
FN3 <1000..>1214 CDD:442628 29/127 (23%)
EGF_CA 1336..1367 CDD:238011
SerNP_524527.3 MNNL 83..238 CDD:462222
DSL 220..282 CDD:128366
EGF_CA 350..388 CDD:238011 14/37 (38%)
EGF_CA 490..526 CDD:238011 13/35 (37%)
EGF_CA 610..645 CDD:238011 14/35 (40%)
EGF_CA 647..683 CDD:238011 10/38 (26%)
EGF_CA 690..720 CDD:238011 13/35 (37%)
EGF_CA 798..833 CDD:238011 12/34 (35%)
EGF_CA 879..913 CDD:238011 14/33 (42%)
EGF_CA 916..952 CDD:238011 13/35 (37%)
VWC_out <993..1053 CDD:214565 9/59 (15%)
Blue background indicates that the domain is not in the aligned region.

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