DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNED1 and R09E10.5

DIOPT Version :10

Sequence 1:XP_011509233.1 Gene:SNED1 / 25992 HGNCID:24696 Length:1437 Species:Homo sapiens
Sequence 2:NP_501890.2 Gene:R09E10.5 / 187743 WormBaseID:WBGene00011175 Length:1437 Species:Caenorhabditis elegans


Alignment Length:301 Identity:69/301 - (22%)
Similarity:102/301 - (33%) Gaps:124/301 - (41%)


- Green bases have known domain annotations that are detailed below.


Human    66 TILEPGPGIG-GPVT-------------------RAPRRASGSRQA------------LDRKVNN 98
            |:|:.||.|. ||.|                   :.|::.:.:|:|            ..|:.|:
 Worm   117 TVLDQGPTINVGPETTDWPRQEDPAMIAPYLCKQQVPQQGNPARRAGVYYRLLLRQSLFGRESNS 181

Human    99 N----GIIS----FLKEVSQFTPVAFPIAKDRCVVAAFWADVDNRRAGDVYYREATDPAMLRRAT 155
            |    |.:.    |.::.||..|                      ...|.|.|           .
 Worm   182 NLNLGGTLQQNAFFGQQASQACP----------------------GTADSYVR-----------C 213

Human   156 EDVRHYFPELLDFNATWV---------------FVATWYR-VTFFGGSS---SSPVNTFQTVLIT 201
            :....||   ||....||               .|.|||. .:...|.|   :....|:|.:.:|
 Worm   214 DSNSDYF---LDQMMIWVQEGVAGGAMFRADAAVVVTWYNTASAISGRSDIDAGQTGTYQVIWLT 275

Human   202 D--GKLSFTIFNYESIVWTTGTHASS--GGNATGLGGIAAQAGFNAGDGQRYFSIPGSRTADMAE 262
            |  .:||:.|.||:.:    |..|..  |.:.:|    ..:|.||.|:.      .|:...|..:
 Worm   276 DSTARLSYVIINYDRL----GFDAQDFRGNSRSG----RCRAVFNGGNH------TGTVEVDPTQ 326

Human   263 -VETTTNV-----GVP----GRWAFRIDDAQVRVGGCGHTT 293
             .:.|..|     |||    ||:.||:||. ||..||.:.|
 Worm   327 PYKNTPKVLAQRSGVPHMVRGRYMFRVDDV-VRPAGCSNKT 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNED1XP_011509233.1 NIDO 128..284 CDD:214712 45/188 (24%)
EGF_CA 296..332 CDD:238011
EGF_CA 335..371 CDD:238011
EGF_CA 411..447 CDD:238011
EGF_CA 455..488 CDD:238011
EGF_CA 569..601 CDD:238011
EGF_CA 609..640 CDD:238011
EGF_CA 645..679 CDD:238011
EGF_CA <688..717 CDD:238011
CCP 722..775 CDD:153056
EGF_CA 778..813 CDD:238011
EGF_CA 817..851 CDD:238011
EGF_CA 854..889 CDD:238011
fn3 932..1012 CDD:394996
FN3 <1000..>1214 CDD:442628
EGF_CA 1336..1367 CDD:238011
R09E10.5NP_501890.2 NIDO 194..358 CDD:214712 49/214 (23%)
AMOP 648..829 CDD:128962
Blue background indicates that the domain is not in the aligned region.

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