DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNED1 and B0393.5

DIOPT Version :10

Sequence 1:XP_011509233.1 Gene:SNED1 / 25992 HGNCID:24696 Length:1437 Species:Homo sapiens
Sequence 2:NP_497982.2 Gene:B0393.5 / 175632 WormBaseID:WBGene00007170 Length:1183 Species:Caenorhabditis elegans


Alignment Length:1244 Identity:274/1244 - (22%)
Similarity:385/1244 - (30%) Gaps:457/1244 - (36%)


- Green bases have known domain annotations that are detailed below.


Human    96 VNNNGIISFLKEVSQFTPVAFPIAKDRCVVAAFWADVDNRRAGDVYYREATDPAMLRRATEDVRH 160
            ::.:|.:.|.::..:  |.|.|:  :...:|.||...   ..|:|:|||.:|..::..|..:|..
 Worm    93 ISRDGSVGFTEKRQK--PSALPV--EEPTIAVFWQPA---TLGNVWYRETSDINIMNLAHNEVNI 150

Human   161 YFPELLDFNATWVFVATWYRVTFFGGSSSSPV------NTFQTVLITDGKLSFTIFNYESIVWTT 219
            .:.....|....|.:.||..|       ..|:      ||||..||....::|..|.|..:.:.|
 Worm   151 QYRYGAQFRVRSVVLITWEGV-------KDPLVPESEGNTFQLALIIGDSMTFAHFIYSKLNFNT 208

Human   220 GTHASSGGNATGLGGIAAQAGFNAGDGQRYFSIPGSRTADMAEVETTTNVGVPGRWAFRIDDAQV 284
            .                |.|||:..|..  :|:|.|.|.|...:...:::|:||.|.||:|..::
 Worm   209 N----------------AIAGFSTRDSS--YSLPDSATNDAILLSEKSDIGIPGEWLFRVDGDRI 255

Human   285 RVGGCGHTTSVCLALRPCLNGGKCIDDCVTGNPSYTCSCLSGFTGRRCHLDVNECASQPCQNGGT 349
            .:.|.|            ..|.:||:.|........||       :.||.|..:...   |..|.
 Worm   256 YLCGAG------------FKGLECIESCAPSQWFNDCS-------KSCHCDGGDSCD---QENGR 298

Human   350 CTHGINSFRCQCPAGFGGPTCETAQSPCDTKECQHG-GQCQVEN-------GSAVCVCQAGYTGA 406
            |.:|    :|. |...|.|.|:.     |..||:.| ..|..|.       ||.:|:|       
 Worm   299 CPNG----KCS-PGWIGEPICDE-----DMDECEMGIDNCPNEQPDCLNTPGSFLCLC------- 346

Human   407 ACEMDVDDCSPDPCLNGGSC-------VDLVGNYTCLCAEP------------FKG--------- 443
               .:.|: :...|.|..:.       ||::..:.....:|            ||.         
 Worm   347 ---FEYDE-AQQKCKNSKAAPPSAPIPVDVIPMHPTFTRKPTPPKVTAPPRNRFKSTTAATSPTF 407

Human   444 ---------------------LRCETGDHP--------VPDACL----SAPCHNGGTCVDADQGY 475
                                 |..|....|        .|.||.    :|.|.||          
 Worm   408 ITETTTRQTTTTREKSISTPLLTTEVVTRPSPTTTVVTAPAACARCDQNAKCSNG---------- 462

Human   476 VCECPEGFMGLDCRERVPDDCECRNGGRCLGANTTLCQCPLGFFGLLCEFEITAMPCNMNTQCPD 540
            ||.|.|||.|              :|.||...:.  |:.|    |.:|.               |
 Worm   463 VCTCSEGFTG--------------DGFRCYDVDE--CEIP----GAVCR---------------D 492

Human   541 GGYCMEHGGSYLCVCH----------TDHNASHSLPSPCDSDPCFNGGSCDAHDDSYTCECPRGF 595
            ...|....||:.|.||          .|.:....||..| .|| ..|..|...|.::.|.|..|:
 Worm   493 HSICSNTIGSFECTCHGGYRFEDGKCEDVDECRELPKIC-GDP-NKGTKCINKDGTFECLCKDGY 555

Human   596 HGKHCEKAR-------PHLCSSGPCRNGGTCKEAGGEYHCSCPYRF----TGRHCEIGKPDSCAS 649
            .|....:.|       |..|  ||   ...|....|.|.|.|...|    .|.||.  ..|.||.
 Worm   556 EGDPSSECRDVNECKNPDAC--GP---NSQCTNTQGGYECECLAGFERIAEGAHCT--DRDECAV 613

Human   650 GPCHNGGTCFHYIGKYKCDCPPGF--SGRHCE------------IAPSPCFRSPCV--------- 691
            .|||....|.:..|.|||:|..||  .|:.|.            :.|.....|..|         
 Worm   614 EPCHPAAICSNTRGSYKCECRDGFVGDGKTCHETILYPISNDSTVIPRSWDSSTAVPILSEITIF 678

Human   692 -----------NG---------GTCEDRDT-----DFFCHCQAGYMGRRCQAEVDCGPPEEVKHA 731
                       ||         |..:..:|     .|..|.|..|:.....|.......:.|...
 Worm   679 GKKYSKIYLSTNGIISFDGPLQGLIDHAETLKKPAIFALHAQFDYIREGLVAYTFINDTDAVTLP 743

Human   732 TL--------------RFNGTRL-----------GA-------VALYACDRGYS----------- 753
            .|              .|...||           |:       :.|...|:..:           
 Worm   744 LLMRSSIGIQTAMGIENFQTKRLHIFTFDRVRQSGSENFNSFQIVLAESDKDATILSLIYEKVQA 808

Human   754 ------LSAPSRI------------RVCQPHGVWSEPPQCLEIDECRSQPCLHGGSCQDRVAGYL 800
                  :|.|||.            .|.|| |.|     ...:|....|.|..|     |:...|
 Worm   809 RGPMTGISTPSRFLMLPNNRLASGSNVGQP-GKW-----MYRVDIADLQTCPPG-----RLGEPL 862

Human   801 C--LCSTGYEGAHCELERDECRAHPCRNGGSCRNL----PGAYVCRCPAGFVGVHCETEVDACDS 859
            |  .|:.|:.|.:||   ..|.   |....:|..:    |||.   |.||:.|..|:.::|.|:.
 Worm   863 CDRECAAGHYGINCE---STCH---CDGSVACDVITGMCPGAL---CRAGWEGSSCDQDIDECEM 918

Human   860 S--PCQHGGRCESGGGAYLCVCPESF--FGYHCETVSDPC---FSSPCGGRGYCLASNGSH-SCT 916
            |  .|..|.:|.:..|.|.|.|...|  .|..|:.: |.|   ||.||.....|:.|..|: .|.
 Worm   919 SLVTCAVGSQCVNTRGGYRCDCKGGFAPVGKECKPI-DRCLSRFSVPCSRNAECVESIESNPKCV 982

Human   917 CKVGYTGE--------------------DCAKEL------------FPPTALK----------ME 939
            |:.||.|:                    |....|            .|.|.|.          .:
 Worm   983 CRKGYHGDGFRCTTRDNIKSAGGNILISDLTHHLMEVASDGTNSTDLPGTGLSENPFVMKNWVSD 1047

Human   940 RVEESGVSISWN---------------PPNGPAAR----QMLDGYAVTYVSSDGSYRRTDFV--- 982
            |:.|:...:|..               ||..|...    .:.||...|...|||......|:   
 Worm  1048 RIGETTTPVSQRPKFVTVQTPPLFYTAPPIKPKINDKDMDLSDGEKPTAELSDGVSSVYVFICVA 1112

Human   983 -------------------DRTRSSHQLQALAAGRAYNISVFSVKRNSNNKNDISRPAVLLARTR 1028
                               .|.|.:.:.|..||.|.:....|..:  |:.....|.|.|:..:| 
 Worm  1113 LLSIWAVLIILVIGIMYINKRKRRNMERQQYAAMRGWKGGQFHSR--SSRMITTSNPNVIYGQT- 1174

Human  1029 PR--PVEGF 1035
            ||  |.|.:
 Worm  1175 PRITPYESY 1183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNED1XP_011509233.1 NIDO 128..284 CDD:214712 43/161 (27%)
EGF_CA 296..332 CDD:238011 6/35 (17%)
EGF_CA 335..371 CDD:238011 9/35 (26%)
EGF_CA 411..447 CDD:238011 9/84 (11%)
EGF_CA 455..488 CDD:238011 13/36 (36%)
EGF_CA 569..601 CDD:238011 10/31 (32%)
EGF_CA 609..640 CDD:238011 10/34 (29%)
EGF_CA 645..679 CDD:238011 15/35 (43%)
EGF_CA <688..717 CDD:238011 10/62 (16%)
CCP 722..775 CDD:153056 17/113 (15%)
EGF_CA 778..813 CDD:238011 10/36 (28%)
EGF_CA 817..851 CDD:238011 10/37 (27%)
EGF_CA 854..889 CDD:238011 12/38 (32%)
fn3 932..1012 CDD:394996 23/130 (18%)
FN3 <1000..>1214 CDD:442628 10/38 (26%)
EGF_CA 1336..1367 CDD:238011
B0393.5NP_497982.2 NIDO 120..255 CDD:214712 43/162 (27%)
EGF_CA 317..346 CDD:429571 9/28 (32%)
EGF_3 453..477 CDD:463759 12/47 (26%)
EGF_CA 479..507 CDD:429571 9/48 (19%)
EGF_CA 520..554 CDD:429571 11/35 (31%)
EGF_CA 565..606 CDD:214542 12/45 (27%)
EGF_3 611..644 CDD:463759 14/32 (44%)
NIDO 714..850 CDD:214712 23/141 (16%)
EGF_CA 912..952 CDD:214542 12/39 (31%)
EGF_3 964..994 CDD:463759 10/29 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.