DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ATL3 and atl3

DIOPT Version :9

Sequence 1:NP_056274.3 Gene:ATL3 / 25923 HGNCID:24526 Length:541 Species:Homo sapiens
Sequence 2:XP_031755947.1 Gene:atl3 / 549349 XenbaseID:XB-GENE-1009682 Length:524 Species:Xenopus tropicalis


Alignment Length:523 Identity:408/523 - (78%)
Similarity:457/523 - (87%) Gaps:1/523 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    17 DAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFML 81
            |.|.||.||||||||||||.|||:|||:||||:||||||||||||||||||||||||||:|||||
 Frog     2 DDMASSAPGPVQVVLVQKDDHSFQLDEEALASVLLQDHIRDLDVVVVSVAGAFRKGKSFLLDFML 66

Human    82 RYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMDTQGA 146
            ||:|||||.|..:|||..:||||||||:|||:|:||||||||||||:.||.||||||||||||||
 Frog    67 RYVYSQKEGGEQSWLGGEDEPLTGFSWKGGSEPDTTGIQIWSEVFTMNKPDGKKVAVVLMDTQGA 131

Human   147 FDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFL 211
            ||||||||||||||||||||||:||||||||||||||||||||||||||||||||.|||||||||
 Frog   132 FDSQSTVKDCATIFALSTMTSSIQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFLKPFQTLMFL 196

Human   212 VRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSP 276
            ||||||||||.||.:|||.||:|||:|||||||||||||.||||||:.|.|||||||||:|||||
 Frog   197 VRDWSFPYEYHYGTEGGMKFLEKRLKVKEHQHEEIQNVRKHIHSCFTAVNCFLLPHPGLKVATSP 261

Human   277 DFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPK 341
            .|||:|||||.||.|||:.|||.||:...||||||||||||||||||||||||||||||||||||
 Frog   262 QFDGRLKDIAPEFTEQLRDLIPLVLSSECLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPK 326

Human   342 SMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKKMGG 406
            ||||||||||||||.|||||:|.|:||:.|||||||:|||:|.|:|....|.||.||.:.|||||
 Frog   327 SMLQATAEANNLAAVASAKDLYNNSMEKTCGGEKPYVSPDVLRERHAVCSQEALAHFDRAKKMGG 391

Human   407 KDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQ 471
            .:||.:|::|||::|.::|..|||||.|||:|:.|||||||...:.|||:|||:|||:||.|:||
 Frog   392 TEFSRQYREELEKDIDDMYTAFCKHNESKNIFTAFRTPAVLLALVAALYMASGVTGFVGLGVLAQ 456

Human   472 LFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDFGAAYVLEQASSHIGNSTQATVRDAVVGRPSM 536
            ||||.||||||||||||||:||||||:|||.||..|.||||||::.:||||:.....| :|.|..
 Frog   457 LFNCAVGLLLIALLTWGYIKYSGQYRDLGGVIDSTAEYVLEQATNRMGNSTRRFAESA-IGAPPE 520

Human   537 DKK 539
            .||
 Frog   521 RKK 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATL3NP_056274.3 P-loop_NTPase 37..305 CDD:304359 227/267 (85%)
atl3XP_031755947.1 P-loop_NTPase 21..295 CDD:422963 230/273 (84%)
GBP_C 298..>418 CDD:397124 87/119 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 471 1.000 Domainoid score I4287
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H9149
Inparanoid 1 1.050 832 1.000 Inparanoid score I4175
NCBI 1 1.000 - -
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 1 1.000 - - FOG0001595
OrthoInspector 1 1.000 - - oto159477
Panther 1 1.100 - - LDO PTHR10751
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1147
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.160

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