DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ATL3 and atln-1

DIOPT Version :9

Sequence 1:NP_056274.3 Gene:ATL3 / 25923 HGNCID:24526 Length:541 Species:Homo sapiens
Sequence 2:NP_001023492.1 Gene:atln-1 / 177059 WormBaseID:WBGene00021868 Length:573 Species:Caenorhabditis elegans


Alignment Length:518 Identity:285/518 - (55%)
Similarity:367/518 - (70%) Gaps:15/518 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    16 DDAMESSKPGPVQVVLVQKD-QHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDF 79
            :|.:...:|..|:||.|.:| .|||||:.:.|..|||...:.|..|.|:.||||:||||||:|:|
 Worm    22 EDVLLPKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNF 86

Human    80 MLRYL---------YSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKK 135
            .||||         ..:.|..:|.|: .|..||:||||||||:.:|.||.||||.|.::...|::
 Worm    87 FLRYLTWRSKADKVMGEVELDNSQWM-SPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDKNGEE 150

Human   136 VAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEI 200
            :||:||||||||||||||||||||||||||.||||||||||||||||||.|||||||||||:::.
 Worm   151 IAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEYGRLALEDS 215

Human   201 FQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLL 265
            ..||||:|:|||||||||||..:|.|||...||:||:|.|.||.|:|.:|.||.|||.|:.|||:
 Worm   216 ASKPFQSLLFLVRDWSFPYEAEFGFQGGQRVLDRRLEVSEKQHAELQQLRQHIRSCFEDIRCFLM 280

Human   266 PHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIK 330
            |||||:|||:|:|||||.||..||::||..:||.:|:...|:.|||||.|:|||.||||||||:.
 Worm   281 PHPGLKVATNPNFDGKLVDIENEFQQQLGVMIPRLLDSHALVHKEINGQKMTCRELLEYFKAYMH 345

Human   331 IYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLAL 395
            |::|:|||.|||||.||||||||||.|||:.:|...|||||||:.||:|.:.|.|.|...|.:|:
 Worm   346 IFRGQDLPEPKSMLMATAEANNLAAVASARAVYQREMEEVCGGDTPYMSTNELLEHHDRVKNIAI 410

Human   396 DHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGL 460
            ..|:..:||||.|||.::.:.||.:::|.|||:.|.|..||:|.:.|||.||.|.::..||....
 Worm   411 REFRNARKMGGVDFSMQFLERLESDLQESYENYLKVNNGKNLFKSMRTPTVLVTLMIIDYIFQEF 475

Human   461 TGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDFGAAYV----LEQASSHIG 519
            ...|||:.:|.|.:.::.|::.||..|.|.||||..||.||.:|....||    :...::|:|
 Worm   476 FQLIGLDFIAGLCSSVLCLVIGALGVWAYSRYSGHLREAGGYVDDAVTYVWTNFISPNANHLG 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATL3NP_056274.3 P-loop_NTPase 37..305 CDD:304359 171/276 (62%)
atln-1NP_001023492.1 P-loop_NTPase 43..325 CDD:393306 172/282 (61%)
GBP_C 351..>447 CDD:308475 52/95 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C161465717
Domainoid 1 1.000 356 1.000 Domainoid score I552
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 567 1.000 Inparanoid score I629
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG58971
OrthoDB 1 1.010 - - D1027269at2759
OrthoFinder 1 1.000 - - FOG0001595
OrthoInspector 1 1.000 - - otm16380
orthoMCL 1 0.900 - - OOG6_102856
Panther 1 1.100 - - LDO PTHR10751
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4011
SonicParanoid 1 1.000 - - X1147
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.940

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