DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATL3 and atln-1

DIOPT Version :10

Sequence 1:XP_047282681.1 Gene:ATL3 / 25923 HGNCID:24526 Length:593 Species:Homo sapiens
Sequence 2:NP_001023492.1 Gene:atln-1 / 177059 WormBaseID:WBGene00021868 Length:573 Species:Caenorhabditis elegans


Alignment Length:518 Identity:285/518 - (55%)
Similarity:367/518 - (70%) Gaps:15/518 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    68 DDAMESSKPGPVQVVLVQKD-QHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDF 131
            :|.:...:|..|:||.|.:| .|||||:.:.|..|||...:.|..|.|:.||||:||||||:|:|
 Worm    22 EDVLLPKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNF 86

Human   132 MLRYL---------YSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKK 187
            .||||         ..:.|..:|.|: .|..||:||||||||:.:|.||.||||.|.::...|::
 Worm    87 FLRYLTWRSKADKVMGEVELDNSQWM-SPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDKNGEE 150

Human   188 VAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEI 252
            :||:||||||||||||||||||||||||||.||||||||||||||||||.|||||||||||:::.
 Worm   151 IAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQEDDLQHLQLFTEYGRLALEDS 215

Human   253 FQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLL 317
            ..||||:|:|||||||||||..:|.|||...||:||:|.|.||.|:|.:|.||.|||.|:.|||:
 Worm   216 ASKPFQSLLFLVRDWSFPYEAEFGFQGGQRVLDRRLEVSEKQHAELQQLRQHIRSCFEDIRCFLM 280

Human   318 PHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIK 382
            |||||:|||:|:|||||.||..||::||..:||.:|:...|:.|||||.|:|||.||||||||:.
 Worm   281 PHPGLKVATNPNFDGKLVDIENEFQQQLGVMIPRLLDSHALVHKEINGQKMTCRELLEYFKAYMH 345

Human   383 IYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLAL 447
            |::|:|||.|||||.||||||||||.|||:.:|...|||||||:.||:|.:.|.|.|...|.:|:
 Worm   346 IFRGQDLPEPKSMLMATAEANNLAAVASARAVYQREMEEVCGGDTPYMSTNELLEHHDRVKNIAI 410

Human   448 DHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGL 512
            ..|:..:||||.|||.::.:.||.:::|.|||:.|.|..||:|.:.|||.||.|.::..||....
 Worm   411 REFRNARKMGGVDFSMQFLERLESDLQESYENYLKVNNGKNLFKSMRTPTVLVTLMIIDYIFQEF 475

Human   513 TGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDFGAAYV----LEQASSHIG 571
            ...|||:.:|.|.:.::.|::.||..|.|.||||..||.||.:|....||    :...::|:|
 Worm   476 FQLIGLDFIAGLCSSVLCLVIGALGVWAYSRYSGHLREAGGYVDDAVTYVWTNFISPNANHLG 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATL3XP_047282681.1 GBP 89..357 CDD:460516 171/276 (62%)
atln-1NP_001023492.1 GBP 43..325 CDD:460516 172/282 (61%)
GBP_C 351..>447 CDD:460721 52/95 (55%)

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