Sequence 1: | XP_006233631.1 | Gene: | Cacna1b / 257648 | RGDID: | 628852 | Length: | 2359 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001259619.1 | Gene: | para / 32619 | FlyBaseID: | FBgn0285944 | Length: | 2145 | Species: | Drosophila melanogaster |
Alignment Length: | 2361 | Identity: | 550/2361 - (23%) |
---|---|---|---|
Similarity: | 914/2361 - (38%) | Gaps: | 759/2361 - (32%) |
- Green bases have known domain annotations that are detailed below.
Rat 69 FTVNRSLFVFSEDNVVRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPDGDKTPMSERLDDT 133
Rat 134 EPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILATAGTDF-DLRTLRAVRVL 197
Rat 198 RPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKFHKAC---FP---- 255
Rat 256 --NSTD--------------AEPVG-DFP-CGKEAPARLCDSDTECRE-YWPGPNFGITNFDNIL 301
Rat 302 FAILTVFQCITMEGWTDILYNTNDAAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEF------A 360
Rat 361 KERERVEN------------RRAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEE---------- 403
Rat 404 ------------DKNAEEKSPLDAV---------------------------------------- 416
Rat 417 -LKRAA----------------------------------------------------------- 421
Rat 422 ----------------------------------------TKKS-------RNDLIHAEEGEDRF 439
Rat 440 VDL--------------CA--AG------SPF--------------------------ARASLKS 456
Rat 457 GKTESSSYFRR----------KEKMFRFLIRRM------------VKAQSF-----------YWV 488
Rat 489 VLCVVALNTLCVAMVHYNQPQRLTTALYFAEFVFLGLFLTEMSLKMYGLGPRSYFRSSFNCFDFG 553
Rat 554 VIVGSIFEVVWAAIKPGTSFGISVLRALRLLRIFKVTKYWNSLRNLVVSLL-NSMKSIISLLFLL 617
Rat 618 FLFIVVFALLGMQLFGGQFN-----FQD-ETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIES 676
Rat 677 Q------GGVSKGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLA----NAQELTKDEEEMEEAAN 731
Rat 732 QKLALQKAKEVAEVSPMSAANISIAAFVKQTRGTVSRSSSVSSVNSPRQQNSAKARSVWEQRASQ 796
Rat 797 LRLQNLRASCEALYSEMDPEERLRYASTRHVRPDMKTHMDRPLVVEPGRDGLRGPA----GNKSK 857
Rat 858 P-------EGTEATEGAD-----PPRRHHRHRDRDKTSASTPAGGEQDRTDCPKAESTETGAREE 910
Rat 911 RARPRRSHSKEAPGADTQVRCERSRRHHRRGSPEEATEREPRRHRAHRHAQDSSKEGKEGTAPVL 975
Rat 976 VPKGERRARHRGPRTGPRETENSEEPTRRHRAKHKVPPTLEPPEREVAEKESNVVEGDKETRNHQ 1040
Rat 1041 PKEPRCDLEAIAVTGVGSLHMLPSTCLQKVDEQPEDADNQRNVTRMGSQPSDPSTTVHVPVTLTG 1105
Rat 1106 PPGEATVVPSANTDLEGQAEGKKEAEADDVLRRGPRPIVPYS-------------SMFCLSPTNL 1157
Rat 1158 -LRRFCHYIVTMRYFEMVILVVIALSSIALAAED------PVRTDSFRNNALKYMDYIFTGVFTF 1215
Rat 1216 EMVIKMIDLGLLLHPGAYFRDLWNILDFIVVSGALVAFAFSSFMGGSKGKDINTIKSLRVLRVLR 1280
Rat 1281 PLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKELERDC 1345
Rat 1346 RGQYLDYE----KEEVEAQPRQWKKYDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYEEQG 1406
Rat 1407 PSPGFRMELSIF---YVVYFVVF-PFFFVNIFVALIIITFQEQGDKVMSECSL-----EKNERAC 1462
Rat 1463 IDFAISAKPLTRYMPQNKQSFQYKTWTFVVSPPFEYFIMAMIALNTVVLMMKFYDAPYEYELMLK 1527
Rat 1528 CLNIVFTSMFSLECILKIIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIAETNNFINLSFLRL 1592
Rat 1593 FRAA---RLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDGTS 1654
Rat 1655 INRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLGNRACDPHAN----ASECGS-DFAYFYFVSF 1714
Rat 1715 IFLCSFLMLNLFVAVIMDNFEYLTRD-SSILGPHHLDEFIRVWAEYDPAACGRISYNDMFEMLKH 1778
Rat 1779 MSPPLGLGKKCPARVAYKRLVRMNMPISNEDMTVHFTSTLMALIRTALEIKLAP------AGTKQ 1837
Rat 1838 HQCDAELRKEISS-VWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKTTRD------ 1895
Rat 1896 -QTHQAPGGLSQMGPVSLFHPLKATLEQTQPAVLRGARVFLRQKSATSLSNG---GAIQTQESGI 1956
Rat 1957 KESLSWGTQRTQDVLYEARAPLERGHSAEIPVGQPGA-----------------------LAVDV 1998
Rat 1999 QMQNMTLRGPD--GEPQPGLE 2017 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Cacna1b | XP_006233631.1 | Ion_trans | 112..367 | CDD:278921 | 93/287 (32%) |
Ion_trans | 500..721 | CDD:278921 | 76/237 (32%) | ||
Ion_trans | 1186..1448 | CDD:278921 | 92/275 (33%) | ||
Ion_trans | 1511..1742 | CDD:278921 | 81/239 (34%) | ||
GPHH | 1750..1814 | CDD:293510 | 19/63 (30%) | ||
Ca_chan_IQ | 1816..1890 | CDD:285917 | 14/80 (18%) | ||
para | NP_001259619.1 | Ion_trans | 165..436 | CDD:278921 | 93/282 (33%) |
Na_trans_cytopl | 515..648 | CDD:288761 | 4/132 (3%) | ||
Ion_trans | 835..1028 | CDD:278921 | 67/210 (32%) | ||
Na_trans_assoc | 1054..1296 | CDD:284034 | 65/473 (14%) | ||
Ion_trans | 1318..1571 | CDD:278921 | 93/277 (34%) | ||
Na_channel_gate | 1561..1613 | CDD:240441 | 11/52 (21%) | ||
Ion_trans | 1636..1871 | CDD:278921 | 81/238 (34%) | ||
GPHH | 1880..1930 | CDD:293510 | 16/54 (30%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |