DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Got2 and Got1

DIOPT Version :9

Sequence 1:NP_037309.1 Gene:Got2 / 25721 RGDID:2722 Length:430 Species:Rattus norvegicus
Sequence 2:NP_725534.1 Gene:Got1 / 36782 FlyBaseID:FBgn0001124 Length:437 Species:Drosophila melanogaster


Alignment Length:412 Identity:198/412 - (48%)
Similarity:261/412 - (63%) Gaps:5/412 - (1%)


- Green bases have known domain annotations that are detailed below.


  Rat    18 HPGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRK 82
            :|||.........|.:..|..||...:..:|:|||.|:|..|:||.|||||.|.|.|:|||.|||
  Fly    10 YPGLLQNFQLSTMSIYADVPKGPAIEVFALTQAFKDDSNPNKVNLSVGAYRTDAGVPWVLPVVRK 74

  Rat    83 AEAQIAG-KNLDKEYLPIGGLADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQ 146
            .|..||. :.::.||||:.||..|..|:.||.||.:|..:|..|...||||||||||||.|.||.
  Fly    75 TEISIASDEQVNHEYLPVTGLETFTNAATELVLGADSPAIKENRAFGVQTISGTGALRVAADFLH 139

  Rat   147 RFFKFSRD-VFLPKPSWGNHTPIFRDAGM-QLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLL 209
            .  :.:|: |:...|:|.||..||.|||. .::.|||:|......||...|.|::..|..:|::|
  Fly   140 T--QLNRNVVYYSNPTWENHHKIFCDAGFTTVKSYRYWDQNKRELDFKNMLADLNDAPPGAVIIL 202

  Rat   210 HACAHNPTGVDPRPEQWKEMAAVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLC 274
            |||||||||:||..|||.|:|.:::||.||..||.|||||||||.|:||||.|:|:::|..:.:|
  Fly   203 HACAHNPTGIDPTQEQWTELADLMEKKKLFPLFDSAYQGFASGDPDRDAWAARYFVQRGFELFIC 267

  Rat   275 QSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPPLNGARIAATILTSPDLRKQ 339
            ||:|||.|||.||.|...||.|:......|.|||.:|||..|||||..||||.:.:|.:|:|||:
  Fly   268 QSFAKNFGLYCERTGNLAVVQKNGATKAAVHSQLTLLIRGQYSNPPAYGARIVSKVLNTPELRKE 332

  Rat   340 WLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSVYMTK 404
            |:..::.|:.||..|||.|...|...|:...|.||.:|||||.:|||....|..|..::.:|:.|
  Fly   333 WMASIQAMSSRIREMRTALRDKLVALGTPGTWDHIVNQIGMFSYTGLNESHVRVLIDQYHIYLLK 397

  Rat   405 DGRISVAGVTSGNVGYLAHAIH 426
            .||||::|:..|||.|:|.|||
  Fly   398 TGRISMSGLNKGNVEYVAKAIH 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Got2NP_037309.1 PLN02397 32..430 CDD:215222 194/398 (49%)
Aminotran_1_2 57..425 CDD:278580 182/370 (49%)
Got1NP_725534.1 PTZ00376 21..423 CDD:240390 195/401 (49%)
Aminotran_1_2 49..418 CDD:278580 182/370 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1448
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62835
OrthoDB 1 1.010 - - D1104596at2759
OrthoFinder 1 1.000 - - FOG0000707
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100337
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X428
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.730

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