DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmbs and l(3)02640

DIOPT Version :9

Sequence 1:XP_038936830.1 Gene:Hmbs / 25709 RGDID:2801 Length:420 Species:Rattus norvegicus
Sequence 2:NP_612103.1 Gene:l(3)02640 / 46140 FlyBaseID:FBgn0010786 Length:652 Species:Drosophila melanogaster


Alignment Length:354 Identity:166/354 - (46%)
Similarity:212/354 - (59%) Gaps:52/354 - (14%)


- Green bases have known domain annotations that are detailed below.


  Rat    50 RVIRVGTRKSQLARIQTDTVVAMLKTLYPGIQFEIIAMSTTGDKILDTALSKVMAVLIPACLVSL 114
            :|||||:|||:||.|||..|:..|:.|||..:|||..|||.||::|:               |||
  Fly     6 KVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRVLN---------------VSL 55

  Rat   115 PTYKGFTLRFFLPWQIGEKSLFTKELENALEKNEVDLVVHSLKDVPTILPPGFTIGAICKRENPC 179
            |             :||||||||::||:||....||.|||||||:||.||.|..|||:.:||:..
  Fly    56 P-------------KIGEKSLFTRDLEDALRNGGVDFVVHSLKDLPTALPTGMAIGAVLEREDAR 107

  Rat   180 DAVVFHPKFIGKTLETLPEKSAVGTSSLRRVAQLQRKFPHLEFKSIRGNLNTRLRKLDEL-QEFS 243
            ||:|....|.|.|:.:||:.|.:|||||||.||::|.:|||....|||||||||.|||.. .:||
  Fly   108 DALVLRENFKGHTIASLPKGSVIGTSSLRRTAQIRRMYPHLTVCDIRGNLNTRLAKLDAADSKFS 172

  Rat   244 AIILAVAGLQRMGWQNRVGQILHPEECMYAVGQGALAVEVRAKDQDILDLVGVLHDPETLLRCIA 308
            .||||.|||.||||.:|:.|:|.|.:.:|||||||||||.||.|..:|.::..|....|..|.:|
  Fly   173 GIILAQAGLVRMGWMSRISQVLEPTDLLYAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILA 237

  Rat   309 ERAFLRHLEGGCSVPVAVHTVMK----DGQ-----LYLTGGVWSLDGSDSMQETMQATIQVPVQQ 364
            ||:||:.|.||||.||||.:.:|    :|.     |.|||.||||||:..::..:...:     .
  Fly   238 ERSFLKTLGGGCSAPVAVWSNLKGEPLNGNSQEVGLSLTGAVWSLDGAIEIRNHLACAL-----N 297

  Rat   365 EDGPEDDPQLVGITARNIPRGAQLAAENL 393
            |...|.|.:         .||||.|...|
  Fly   298 EQKLEGDQR---------KRGAQEATSQL 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmbsXP_038936830.1 PBP2_HuPBGD_like 51..358 CDD:270363 157/316 (50%)
l(3)02640NP_612103.1 hemC 6..289 CDD:234612 157/310 (51%)
PBP2_HuPBGD_like 7..296 CDD:270363 157/316 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348339
Domainoid 1 1.000 239 1.000 Domainoid score I2210
eggNOG 1 0.900 - - E1_COG0181
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H158
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1189095at2759
OrthoFinder 1 1.000 - - FOG0004130
OrthoInspector 1 1.000 - - oto97090
orthoMCL 1 0.900 - - OOG6_101048
Panther 1 1.100 - - LDO PTHR11557
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2873
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.710

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