DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FRMD3 and frmd3

DIOPT Version :9

Sequence 1:NP_777598.3 Gene:FRMD3 / 257019 HGNCID:24125 Length:597 Species:Homo sapiens
Sequence 2:NP_001072510.1 Gene:frmd3 / 779965 XenbaseID:XB-GENE-1011845 Length:585 Species:Xenopus tropicalis


Alignment Length:584 Identity:438/584 - (75%)
Similarity:516/584 - (88%) Gaps:6/584 - (1%)


- Green bases have known domain annotations that are detailed below.


Human    17 MIHFRSSSVKSLSQEMRCTIRLLDDSEISCHIQRETKGQFLIDHICNYYSLLEKDYFGIRYVDPE 81
            |:..|::|::||:.:||||||||||:|||.:|||:||||||:|:|||:|:||||||||||:||||
 Frog     1 MMRLRTASLRSLNLDMRCTIRLLDDTEISFNIQRDTKGQFLLDYICNHYNLLEKDYFGIRFVDPE 65

Human    82 KQRHWLEPNKSIFKQMKTHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFS 146
            ||||||:|:|.:.||||:||||||||||||||||||||||||||||||||||||||||||||.|:
 Frog    66 KQRHWLDPSKPVAKQMKSHPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCCFA 130

Human   147 DAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQSPPVAEFNLL 211
            |||:|||||||||:|||||||||:|||.:|:||||||||||||||||||||||||||.|:|||||
 Frog   131 DAAFLGACIVQAEIGDYDPDEHPDNYICDFKIFPKQSQKLERKIVEIHKNELRGQSPSVSEFNLL 195

Human   212 LKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFVVFQGNKRIHLIKWPDVCKLKFEGKTFYVIGT 276
            ||||:||||||||||||||||||||||:|||||||||||||||||||||:||:||:||||:|:..
 Frog   196 LKAHSLETYGVDPHPCKDSTGTTTFLGYTAAGFVVFQGNKRIHLIKWPDICKMKFDGKTFHVVVM 260

Human   277 QKEKKAMLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVAKEV 341
            |||||.:|.:|||||||||||||||||||||||||||||:|||:||.||||||||||.|||||||
 Frog   261 QKEKKNILTYHTSTPAACKHLWKCGVENQAFYKYAKSSQVKTVTSSNIFFKGSRFRYCGKVAKEV 325

Human   342 VEASSKIQREPPEVHRANITQSRSSHSLNKQLIINMEPLQPLLPSPS----EQEEELPLGEGV-P 401
            |||||||||:||||||:.|..||||:||||||||||||||||:|||:    |:|||..:.||: .
 Frog   326 VEASSKIQRDPPEVHRSLIPHSRSSYSLNKQLIINMEPLQPLIPSPNEEEEEEEEENQIDEGILL 390

Human   402 LPKEENISAPLISSSPVKAAREYEDPPSEEEDKIKEEPLTISELVYNPSASLLPTPVDDDEIDML 466
            |.:.|..|||::.:||.:......|...:||:.|:||||||||.||||||||||||||:. ||||
 Frog   391 LQQSEASSAPVLGNSPARGLETTADVTHDEEESIREEPLTISEQVYNPSASLLPTPVDEG-IDML 454

Human   467 FDCPSRLELEREDTDSFEDLEADENAFLIAEEEELKEARRALSWSYDILTGHIRVNPLVKSFSRL 531
            |:.|.|.|.|::||||||||||||:|||||||||:||||:||||||:.:.|::::|..:||||:|
 Frog   455 FNSPLRAEREKDDTDSFEDLEADEHAFLIAEEEEMKEARKALSWSYNFIMGNMQLNAFLKSFSKL 519

Human   532 LVVGLGLLLFVFPLLLLLLESGIDLSFLCEIRQTPEFEQFHYEYYCPLKEWVAGKVHLILYMLG 595
            |:..:|||:.|.||||:||||.||:|||.|||.||||||||:|||||.::|||.|:...|.:.|
 Frog   520 LLAAIGLLMVVLPLLLILLESDIDVSFLREIRLTPEFEQFHHEYYCPFRKWVACKLSAALNLFG 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FRMD3NP_777598.3 B41 33..225 CDD:214604 165/191 (86%)
FERM_N 36..98 CDD:286467 47/61 (77%)
FERM_M 117..225 CDD:278785 96/107 (90%)
PH-like 206..309 CDD:302622 88/102 (86%)
FA 323..>357 CDD:285894 30/33 (91%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 383..403 10/24 (42%)
frmd3NP_001072510.1 B41 17..209 CDD:214604 165/191 (86%)
FERM_N 20..83 CDD:286467 48/62 (77%)
FERM_M 101..209 CDD:278785 96/107 (90%)
FERM_C_FRMD3_FRMD5 190..293 CDD:270013 88/102 (86%)
FA 307..343 CDD:285894 32/35 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 284 1.000 Domainoid score I10007
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H16012
Inparanoid 1 1.050 917 1.000 Inparanoid score I3586
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG40727
OrthoDB 1 1.010 - - D105082at32523
OrthoFinder 1 1.000 - - FOG0002996
OrthoInspector 1 1.000 - - oto158481
Panther 1 1.100 - - LDO PTHR23280
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7059
SonicParanoid 1 1.000 - - X1988
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1313.110

Return to query results.
Submit another query.