DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cebpd and Irbp18

DIOPT Version :9

Sequence 1:NP_037286.1 Gene:Cebpd / 25695 RGDID:2328 Length:268 Species:Rattus norvegicus
Sequence 2:NP_001261698.1 Gene:Irbp18 / 39243 FlyBaseID:FBgn0036126 Length:113 Species:Drosophila melanogaster


Alignment Length:93 Identity:22/93 - (23%)
Similarity:50/93 - (53%) Gaps:13/93 - (13%)


- Green bases have known domain annotations that are detailed below.


  Rat   187 PDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDLASLR--- 248
            |....|.|:::|::||.||:::|:|.|:..:|.::::.:|..:|:.|..::|...:.:::||   
  Fly    21 PHTDDPAYKEKRKKNNEAVQRTREKTKKSAEERKKRIDDLRKQNDALKVQIETSEKHISTLRDLI 85

  Rat   249 ----------QFFKELPSPPFLPPTGTD 266
                      :..:|:.:.|...|...|
  Fly    86 IQGEKTEDGHRIIQEILAEPDPDPKDND 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CebpdNP_037286.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..50
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 98..132
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 152..223 12/35 (34%)
bZIP_CEBPD 188..252 CDD:269862 17/76 (22%)
coiled coil 191..249 CDD:269862 17/70 (24%)
Basic motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00978 195..222 9/26 (35%)
Leucine-zipper. /evidence=ECO:0000255|PROSITE-ProRule:PRU00978 226..254 6/40 (15%)
Irbp18NP_001261698.1 bZIP_CEBP 24..83 CDD:269841 16/58 (28%)
coiled coil 25..83 CDD:269841 16/57 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45835
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.