DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ddr1 and smal

DIOPT Version :9

Sequence 1:NP_001159494.1 Gene:Ddr1 / 25678 RGDID:2252 Length:910 Species:Rattus norvegicus
Sequence 2:NP_723165.2 Gene:smal / 5740323 FlyBaseID:FBgn0085409 Length:939 Species:Drosophila melanogaster


Alignment Length:710 Identity:196/710 - (27%)
Similarity:294/710 - (41%) Gaps:177/710 - (24%)


- Green bases have known domain annotations that are detailed below.


  Rat     8 SLLLLLLLVTIG----DADMKGHFDPAKCRYALGMQDRTIPDSDISVSSSWSDS-TAARHSRLES 67
            :|.|..|::..|    :|.....||.|.|...|||:...|.|:.|:.||:...: ...:|:||::
  Fly    50 TLCLWTLVIASGCLMLNAPTTMAFDIATCNVPLGMESLLITDAQITASSAHDMAFVGPQHARLKT 114

  Rat    68 SDGDGAWCPAGPVFPKEEEYLQVDLRRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDG-RRWM 131
            .:..|||||...|....:|||||||.:.|::..:.||||:..|.|:|::.:|.|.|.|.| .:|.
  Fly   115 DNDGGAWCPKHMVSNALKEYLQVDLLQTHVITAIRTQGRYGKGQGQEYTEAYVLEYWRPGFDKWQ 179

  Rat   132 DWKDRWGQEVISGNEDPGGVVLKDLGPPMVARLVRFYPRADRVMSVCLRVELYGCLWRDGLLSYT 196
            .||:..|:|::.||.:....|...|.|.:.|..:|.||......:||||.|:.||.|.:|::||:
  Fly   180 RWKNIQGKEILPGNINTYSEVENALQPIIFASKIRIYPYGQYDRTVCLRAEIVGCPWEEGIVSYS 244

  Rat   197 APVGQTMQLSEMVYLNDSTYDGYTAGGLQYGGLGQLADGVVGLDDFRQSQELRVWPGYDYVGWSN 261
            .|.|  :|....|.|:|.||||...|.....|||||.||..|.|:||.... ....||:::||.|
  Fly   245 IPKG--VQRGMEVDLSDKTYDGNEQGDRYVDGLGQLVDGQKGKDNFRTDIH-GFGKGYEWIGWRN 306

  Rat   262 HSFPSGY----VEMEFEFDRLRSFQTMQVHCNNMHTLGARLPGGVECRFKRGPAMAWEGEPVRHA 322
            .:  .|.    ||:.||||.:|:|..:.:|.|||.|...::....:..|..| ...:.||||:.:
  Fly   307 DT--PGLLGKPVEIVFEFDTVRNFSAIVLHTNNMFTKDVQVFVHAKVFFSIG-GRYFSGEPVQFS 368

  Rat   323 LGGSLGDPRARAISVPLGGHVGRFLQCRFLFAGPWLLFSEISFISDVVNDSSDTFPPAPWWPPGP 387
            .........||.:::.|...||::|:....||..|::.|||||||                  .|
  Fly   369 YMPDTIMDHARDVTIKLHHRVGKYLKINLYFAVKWIMLSEISFIS------------------VP 415

  Rat   388 PPTNFSSLELEPRGQQP-----------------------------------VAKAEG------- 410
            ...||:. |.|.|...|                                   ||.|.|       
  Fly   416 AMGNFTD-EQEQRSNSPSQAQDVHDETNGSEYQANRNKPNGVGGSAGGLGEGVAAAGGDIVGNNK 479

  Rat   411 --------SPTAI--------LIGCLVAII-LLLLLIIALMLWRLHWRRLLSKAER----RVLEE 454
                    :|..|        .||.::.:: .:::|::|::|:      ::|:.:|    .||: 
  Fly   480 YNNGPQLIAPRPIDQEPNDANFIGVVIVVLTTIIILLVAIILF------IVSRTKRARGSNVLD- 537

  Rat   455 ELTVHLSVPGDTI---LINNRPGPR-------------EPPPYQEPRPRGTPTHSAPCVPNGSAL 503
              ....|...:|:   :..:||...             :...|.||    ...:...|..||.|.
  Fly   538 --AFQYSFNPNTLGGNVDKHRPNGNSIKANVDDNDSIGKNSLYHEP----FNVNMYTCGVNGYAA 596

  Rat   504 LLSNPAYRLLLATYARPPRGPGPPTPAWAKPTNTQACSGDYMEPEK--PGAP---------LLPP 557
            :  |.....:...|...|.|      .:|.| :.|    |||...|  .|||         ..||
  Fly   597 V--NDLQCNMTPDYTDVPEG------GYAVP-HMQ----DYMPSSKMGGGAPGGGGYVNVRRTPP 648

  Rat   558 PPQNSV-PHYAEADIVTLQGVTGGNTYAVPALPPGAVGDGPPRVDFPRSRLRFKEKLGEG 616
            ||.:|: |.                   .|.:||      ||...:..:...||...|.|
  Fly   649 PPLSSIFPR-------------------PPTVPP------PPMEKYYATTAIFKPLKGPG 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ddr1NP_001159494.1 FA58C 58..185 CDD:238014 48/127 (38%)
DS-like domain. /evidence=ECO:0000250 193..368 64/178 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 467..494 5/42 (12%)
PPxY motif 478..481 0/2 (0%)
PTKc_DDR1 601..904 CDD:133227 4/16 (25%)
smalNP_723165.2 FA58C 78..234 CDD:214572 57/155 (37%)
FA58C 81..233 CDD:238014 56/151 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 101 1.000 Domainoid score I6757
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 524 1.000 Inparanoid score I1204
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122892at33208
OrthoFinder 1 1.000 - - FOG0001292
OrthoInspector 1 1.000 - - mtm9045
orthoMCL 1 0.900 - - OOG6_103661
Panther 1 1.100 - - O PTHR24416
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X998
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.970

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