DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smad1 and Mad

DIOPT Version :9

Sequence 1:XP_006255456.1 Gene:Smad1 / 25671 RGDID:3030 Length:483 Species:Rattus norvegicus
Sequence 2:NP_001259992.1 Gene:Mad / 33529 FlyBaseID:FBgn0011648 Length:525 Species:Drosophila melanogaster


Alignment Length:484 Identity:348/484 - (71%)
Similarity:380/484 - (78%) Gaps:52/484 - (10%)


- Green bases have known domain annotations that are detailed below.


  Rat     5 SLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIPR 69
            |||||||||||:|||||||||||||||||||:|||||||:|||:||||:|||||||||.||||||
  Fly    89 SLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKRKGAIEELERALSCPGQPSKCVTIPR 153

  Rat    70 SLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRVESPV 134
            ||||||||||||||||||||||||||||||||||||||.|::||.:|||||||||||||||||||
  Fly   154 SLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESPV 218

  Rat   135 LPPVLVPRHSEYNPQHSLLAQFRNLGQNEPHMPLNATFPDSFQQPHSHPFPQSPNSSYPNSPGSS 199
            |||||||||||:.|.||:| ||.::.  ||.||.|.::.:|....||.               |:
  Fly   219 LPPVLVPRHSEFAPGHSML-QFNHVA--EPSMPHNVSYSNSGFNSHSL---------------ST 265

  Rat   200 SSTYPHSPTS--SDPGSPFQMPADTPPPAYLPPEDPMA---QDGSQPMDTNMTNMTAPTLPAEIN 259
            |:|...||:|  |:|.||:...|.||||||.|.||..:   .||.|.:|..|             
  Fly   266 SNTSVGSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDAQM------------- 317

  Rat   260 RGGEVSCRSPCESLLSADVQAVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPSNNK 324
                            .||..|:|.||..|.||.|||||.||||.||.::.||:|||||:||||.
  Fly   318 ----------------GDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNS 366

  Rat   325 NRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTV 389
            :|.|||.||||||||||||||||||||||||||.|||||||||||:||||||||||||||||:||
  Fly   367 DRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTV 431

  Rat   390 CKIPSGCSLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWI 454
            ||||.||||||||||||||||:||||:|||.||||||||||||||||||||||||||||||||||
  Fly   432 CKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWI 496

  Rat   455 EIHLHGPLQWLDKVLTQMGSPHNPISSVS 483
            |||||||||||||||||||||||.|||||
  Fly   497 EIHLHGPLQWLDKVLTQMGSPHNAISSVS 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smad1XP_006255456.1 MH1_SMAD_1_5_9 9..132 CDD:199814 111/122 (91%)
PRK10263 <133..>244 CDD:236669 50/115 (43%)
MH2_SMAD_1_5_9 283..483 CDD:199822 174/199 (87%)
MadNP_001259992.1 MH1_SMAD_1_5_9 93..216 CDD:199814 111/122 (91%)
MH2_SMAD_1_5_9 325..525 CDD:199822 174/199 (87%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 322 1.000 Domainoid score I1179
eggNOG 1 0.900 - - E1_KOG3701
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21196
Inparanoid 1 1.050 701 1.000 Inparanoid score I638
OMA 1 1.010 - - QHG48637
OrthoDB 1 1.010 - - D274383at33208
OrthoFinder 1 1.000 - - FOG0000630
OrthoInspector 1 1.000 - - otm44661
orthoMCL 1 0.900 - - OOG6_103959
Panther 1 1.100 - - O PTHR13703
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X373
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.880

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