DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABRG2 and pHCl-1

DIOPT Version :10

Sequence 1:NP_944493.2 Gene:GABRG2 / 2566 HGNCID:4087 Length:515 Species:Homo sapiens
Sequence 2:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster


Alignment Length:470 Identity:108/470 - (22%)
Similarity:193/470 - (41%) Gaps:126/470 - (26%)


- Green bases have known domain annotations that are detailed below.


Human     1 MSSPNIWSTGSSVYSTPV------------FSQKMTVW-----ILLLLSLYPGFTSQKSDDD--- 45
            ||:..|.:.|::..:|..            :||.::.:     :|:|..|....|:..:..:   
  Fly   253 MSAAIIANVGATAAATSAAAFQYLGQHYKHYSQSISFYAASSVLLMLCYLTTASTAAATQSETGA 317

Human    46 -------------YEDYASNKTWVLTPKVPEGDVTVILNNLLE--GYDNKLRPDI-------GV- 87
                         :::.:|:|.              ||:.|||  .||.:|.|.:       |: 
  Fly   318 LDKHPIHGIDWSKFDESSSDKE--------------ILDLLLEKKRYDKRLLPPVNDEDFCCGLQ 368

Human    88 ---------------KPTL-IHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNSTIKVLR 136
                           :.|| ::.::.:.|:...:..:::|.::....|.|.|.||::.:......
  Fly   369 SPDMATNQNARRPHNRGTLTVNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDF 433

Human   137 LNS-NMVGKIWIPDTFF-RNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPM 199
            ||: :....||.|||:| .:....|.  |...:..|||:.:|.:.|.:|..:...||..||.||.
  Fly   434 LNALHHHDSIWTPDTYFIMHGDFKDP--IIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPF 496

Human   200 DEHSCPLEFSSWSRSIAQAGMCSGVISAHYSLRFWGSTDPPTLASRVAGISDGYPREEIVYQWKR 264
            |:..|.....|.|                                        |...:|.|.||.
  Fly   497 DDPKCSFSMESIS----------------------------------------YEEAQIKYVWKN 521

Human   265 SSVEVGDT--RSWRLYQFSFVGLRNTTEVVKTTS--GDYVVMSVYFDLSRRMGYFTIQTYIPCTL 325
            ..    ||  :|..|...:...::|.|......|  |:|..:.|....:|...|:....:||..:
  Fly   522 DE----DTLRKSPSLTTLNAYLIKNQTTACDQNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGII 582

Human   326 IVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSAL 390
            :|..|:::||:..:|||||..:|:||:|...|.|...|.:||.||.:|||:::..||..|::::|
  Fly   583 LVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASL 647

Human   391 VEYGTLHYFVSNRKP 405
            :|:..::| |..::|
  Fly   648 LEFVCVNY-VGRKRP 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABRG2NP_944493.2 LIC 69..512 CDD:455710 95/369 (26%)
LGIC_ECD_GABAAR_G 90..311 CDD:349801 50/227 (22%)
Cys-loop 190..204 CDD:349801 7/13 (54%)
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 95/384 (25%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
Blue background indicates that the domain is not in the aligned region.

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