DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABRE and Rdl

DIOPT Version :9

Sequence 1:NP_004952.2 Gene:GABRE / 2564 HGNCID:4085 Length:506 Species:Homo sapiens
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:616 Identity:154/616 - (25%)
Similarity:248/616 - (40%) Gaps:157/616 - (25%)


- Green bases have known domain annotations that are detailed below.


Human    25 TESKNEASSRDVVYGPQPQ-PL-------ENQLLSEETKSTETET-------GSRVGKLPEASRI 74
            ::||.:..:|   ..|.|: ||       ...|:::||......|       ||.:|.: ..|.|
  Fly     2 SDSKMDKLAR---MAPLPRTPLLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDV-NISAI 62

Human    75 LNTILSNYDHKLRPGIGEKPTVVTVEISVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDT--F 137
            |::...:||.::||..|..|..|.|.:.|.|:..||.:.|::|:|..|.|.|.|.||.|...  .
  Fly    63 LDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGV 127

Human   138 ESLVLNGNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRF 202
            |:|.:....:..:|:|||||.|.|:::.|..|..|:.:|::..|.:..:||:||.|.|.:::..|
  Fly   128 ETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYF 192

Human   203 PMDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGDFMVM 267
            |||...|.:...||.|...::.|.|.:....:...:..:|.||...|...:...|....|::..:
  Fly   193 PMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRL 257

Human   268 TIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTLGTFSRKNFP 332
            .......|..||...|.|:||.:..::||||||:...:.|||.:||:|:|||||||.:.:....|
  Fly   258 ACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALP 322

Human   333 RVSYITALDFYIAICFVFCFCALLEFAVLNFLI--------------------------YNQTKA 371
            ::||:.::|.|:..|||..|.:|||:|.:.::.                          .||.:|
  Fly   323 KISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQA 387

Human   372 HASPKL---------------------------------------RHPRINSRAHA--------- 388
            :.:|..                                       .|...:...||         
  Fly   388 NPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRP 452

Human   389 ------RTRARSRACA----------------RQHQEAFVCQIVTTEGSDGEERPSCSAQQ---P 428
                  :....:|.|:                :.|.:....:.....|..|.:.......|   |
  Fly   453 IGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGP 517

Human   429 PSPGS--------PEG--------PRSLC--SKLACCEWCKRFKKYFCMVPDCEGSTWQQGRLCI 475
            |..|.        |||        |..|.  .|:   :..|...|...:.|.             
  Fly   518 PGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKV---KKVKDINKLLGITPS------------- 566

Human   476 HVYRLDNYSRVVFPVTFFFFNVLYWLVCLNL 506
               .:|.|||:||||.|..||::||::.|::
  Fly   567 ---DIDKYSRIVFPVCFVCFNLMYWIIYLHV 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABRENP_004952.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..66 13/55 (24%)
Neur_chan_LBD 71..276 CDD:280998 62/206 (30%)
Neur_chan_memb 285..>408 CDD:280999 45/218 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 413..438 9/43 (21%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 53/182 (29%)
Neur_chan_memb 274..588 CDD:397193 71/332 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.910

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