DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCML4 and Sfmbt

DIOPT Version :10

Sequence 1:XP_047274551.1 Gene:SCML4 / 256380 HGNCID:21397 Length:467 Species:Homo sapiens
Sequence 2:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster


Alignment Length:172 Identity:52/172 - (30%)
Similarity:73/172 - (42%) Gaps:26/172 - (15%)


- Green bases have known domain annotations that are detailed below.


Human   302 DTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPA-----ATAGGPRTSPMSSGGPSAPGLRPP 361
            |.|.|..:.:.:...||.|..   .||.   |.|.|     ||.........::..|:.|     
  Fly  1069 DGSTSHISEQSTTQSSSDLIA---GSGS---GSGSASLVTLATGSNKTVKKSTTKSPAPP----- 1122

Human   362 ASSPKRNTTSLEGNRCASS----PSQDAQDARRPR-SRNPSAWTVEDVVWFVKDADPQALGPHVE 421
              :..|..||...|..|::    |.....|:..|. ...|..|.|.||..|::..|..|   |.:
  Fly  1123 --TVGRKATSYIANSSATNNKYIPRLADIDSSEPHLELVPDTWNVYDVSQFLRVNDCTA---HCD 1182

Human   422 LFRKHEIDGNALLLLKSDMVMKYLGLKLGPALKLCYHIDKLK 463
            .|.:::|||..||.|..|.:|..||:|:|||||:...|.:||
  Fly  1183 TFSRNKIDGKRLLQLTKDDIMPLLGMKVGPALKISDLIAQLK 1224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCML4XP_047274551.1 RBR 1..53 CDD:465382
SLED 149..258 CDD:463469
SAM_Scm 393..464 CDD:188977 29/71 (41%)
SfmbtNP_001137821.1 MBT_dSfmbt_rpt1 564..672 CDD:439109
MBT_dSfmbt_rpt2 674..753 CDD:439112
MBT_dSfmbt_rpt3 798..904 CDD:439115
MBT_dSfmbt_rpt4 905..976 CDD:439118
SAM_Scm-like-4MBT 1160..1226 CDD:188979 29/68 (43%)
Blue background indicates that the domain is not in the aligned region.

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