DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCML4 and mbtr-1

DIOPT Version :10

Sequence 1:XP_047274551.1 Gene:SCML4 / 256380 HGNCID:21397 Length:467 Species:Homo sapiens
Sequence 2:NP_001122542.1 Gene:mbtr-1 / 171624 WormBaseID:WBGene00021661 Length:564 Species:Caenorhabditis elegans


Alignment Length:344 Identity:66/344 - (19%)
Similarity:106/344 - (30%) Gaps:121/344 - (35%)


- Green bases have known domain annotations that are detailed below.


Human    60 TNALPENSLDRLRQAENPPIPLERDQVSGSHDSLSPLTSAEYPRARPQLHPSGRSHGPQL---GG 121
            |..||..:|:..       :|||:     .:..|.|....|.. .||.|.||..:..|::   |.
 Worm    78 TQFLPVEALEGC-------LPLEK-----LNQHLKPGFRLEVV-VRPSLDPSITTKSPEIRWFGE 129

Human   122 PTGSHRFPKDPIRPQSDPLPSNPVRVAVC-LYIN----------------------------KQA 157
            .|                        ||| .|:.                            ||.
 Worm   130 VT------------------------AVCGFYVAIKFVGELNRRPCWFHMLSEDIFDIGSGLKQD 170

Human   158 NAGPYLERK-----KVQQLPEHF------GP--ERPSAVLQQAVQACIDCAHQQKLVFSLVKQGY 209
            .|..:|:.:     |..|.|:.:      .|  .||:..:....||.:   |:.:          
 Worm   171 PAMKWLQYRPLSLLKPMQCPKFWRRGSTPAPPVPRPTEEILDEFQAEL---HENR---------- 222

Human   210 GGEMVSVSASFDGKQHLRSLPV-------VNSIGY-------VLRFLAKLCRSLLCDDLFSHQPF 260
                :|....||..:||...|.       |..:.|       |.|.|..|.|.|:.  :.:.|.:
 Worm   223 ----ISEPKIFDQLRHLAHRPSRFRLNQRVELLNYLEPTEIRVARILRILGRRLMV--MVTAQDY 281

Human   261 PRGCSASEKVQEKEEGRMESVK-TVTTEEYLVNPVG---MNRYSVDTSASTFNHRGSLHPSSSLY 321
            |....:.|  .:..:.:.|:|: .|....:.:.|||   :|......:.....|...:...|..|
 Worm   282 PEDLPSVE--AKDRQVQHENVEFWVDESSFFLFPVGFAMINGLRTKATEGYLEHSRRIAEGSGSY 344

Human   322 CKRQNSGDSHLGGGPAATA 340
            .|...:.:....|.|..:|
 Worm   345 HKDDVTFEQLFAGKPDISA 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCML4XP_047274551.1 RBR 1..53 CDD:465382
SLED 149..258 CDD:463469 30/164 (18%)
SAM_Scm 393..464 CDD:188977
mbtr-1NP_001122542.1 MBT 96..>164 CDD:459242 15/92 (16%)
MBT 217..326 CDD:214723 25/129 (19%)
MBT_dSfmbt-like_rpt3 369..460 CDD:439089
MBT 479..549 CDD:459242
Blue background indicates that the domain is not in the aligned region.

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