DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrdc and CG10588

DIOPT Version :9

Sequence 1:XP_006238561.1 Gene:Nrdc / 25499 RGDID:3210 Length:1229 Species:Rattus norvegicus
Sequence 2:NP_001287135.1 Gene:CG10588 / 40316 FlyBaseID:FBgn0037037 Length:1058 Species:Drosophila melanogaster


Alignment Length:1163 Identity:340/1163 - (29%)
Similarity:562/1163 - (48%) Gaps:191/1163 - (16%)


- Green bases have known domain annotations that are detailed below.


  Rat    97 DPEIIKSPSDPKQYRYIKLQNGLQALLISDLSNVEGKTGNATDEEEEEEEEEEEGEEEEEEEEDD 161
            :|:  ||..|.|.||.:.|.|||:|:||||                                   
  Fly    39 EPD--KSDGDSKLYRALTLSNGLRAMLISD----------------------------------- 66

  Rat   162 DDDDDEDSGAEIQDDDEEGFDDEEEFDDDEHDDDDLDNEENELEELEERVEARKKTTEKQQSQNL 226
                              .:.||...                                       
  Fly    67 ------------------SYIDEPSI--------------------------------------- 74

  Rat   227 FLLWSKLTDRLWFKSSYSKMSSTLLVETRNLYGVVGAESRSAPVEHLAGWQVEEQQGETDTVLSA 291
                        .::|...::|:    |.|..|                            .|:|
  Fly    75 ------------HRASRESLNSS----TENFNG----------------------------KLAA 95

  Rat   292 AALCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTDCERTVFQFD 356
            .|:.||||||::|....|||||:|||:||||.|:|.||.||:|:.|.||..||.|:.|.|.|.|:
  Fly    96 CAVLVGVGSFSEPQQYQGLAHFVEHMIFMGSEKFPVENEFDSFVTKSGGFSNAHTENEETCFYFE 160

  Rat   357 VQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLARPSDANRKEMLFGSLARPGHPMGK 421
            :.:.:....:|.:......|||:.||:.||..||.||::.....|..|::.:..|||..|:|.|.
  Fly   161 LDQTHLDRGMDLFMNLMKAPLMLPDAMSRERSAVQSEFEQTHMRDEVRRDQILASLASEGYPHGT 225

  Rat   422 FFWGNAETLKHEPKKNNIDTHARLREFWMRYYSAHYMTLVVQSKETLDTLEKWVTEIFSQIPNNG 486
            |.|||.:|||.....:::  |..|.:|:..:|.::.|.:.:|::.:||.||:.:....:.||.:.
  Fly   226 FSWGNYKTLKEGVDDSSL--HKELHKFYRDHYGSNRMVVALQAQLSLDELEELLVRHCADIPTSQ 288

  Rat   487 LPKPNFSHLT--DPFDTPAFNKLYRVVPIRKIHALTITWALPPQQQHYRVKPLHYISWLVGHEGK 549
            ....:.|.|.  ..|....:..::.|.|:..:..|.:||.|||.:..||.||..:||.|:|:||.
  Fly   289 QNSIDVSQLNYQKAFRDQFYKDVFLVQPVEDVCKLELTWVLPPMKNFYRSKPDMFISQLIGYEGV 353

  Rat   550 GSILSYLRKKCWALALFGGNGETGFEQNSTYSVFSISITLTDEGYEHFYEVAHTVFQYLKMLQKL 614
            ||:.:|||...|.:::..|..|:.|:.||.||:|:|.|.|:|:|::|..||....|.::|::...
  Fly   354 GSLCAYLRHHLWCISVVAGVAESSFDSNSIYSLFNICIYLSDDGFDHIDEVLEATFAWVKLIINS 418

  Rat   615 GPEKRVFEEIQKIEDNEFHYQEQTDPVEYVENMCENMQLYPRQDFLTGDQLLFEYKPEVIAEALN 679
            ...:..::|.|:||:|.|.:|.:..|:::|:::.|:....|.:|.|||.||.|:|:...| |.|.
  Fly   419 DQLQDSYKESQQIENNNFRFQIEPPPIDHVQSIVESFNYLPSKDVLTGPQLYFQYEESAI-ELLR 482

  Rat   680 QLVPQKANLVLLSGA----NEGRCDLKEKWFGTQYSIEDIENSWTELWKSNFDLNSDLHLPAENK 740
            |.: .|.|..::..:    .:...|.:|.|||||:....:...|..:|:.:..: .:||.|..|.
  Fly   483 QHM-NKFNFNIMISSYIPYEKNEYDQREPWFGTQFKTISMPPKWQTMWEQSATI-KELHYPQPNP 545

  Rat   741 YIATDFTLKAFDCPE---TEYPAKIVNTPQGCLWYKKDNKFKIPKAYIRFHLISPLIQKSAANVV 802
            ::.|||.:...:..:   :..|..::......||:::||.||:|..||..:.|:||:::|....:
  Fly   546 FVTTDFKIHWVESGKPHVSRSPKALIRNDLCELWFRQDNIFKLPDGYINLYFITPLVRESVKQYM 610

  Rat   803 LFDIFVNILTHNLAEPAYEADVAQLEYKLVAGEHGLIIRVKGFNHKLPLLFQLIIDYLTEFSSTP 867
            |..:|..::...:||..|.|..|.|.|.|..|:.||::||.|:|.|||||.::|::.:.......
  Fly   611 LGVLFTYLVEFRMAEQLYPALEAGLTYGLYIGDKGLVMRVSGYNEKLPLLVEIILNMMQTIELDI 675

  Rat   868 AVFTMITEQLKKTYFNILIKPETLAKDVRLLILEYSRWSMIDKYRALMDGLSLESLLNFVKDFKS 932
            .......:..|:..:|.||..::|..|:||.|||..|:|||.||.: :|.::::.:.:|.::|..
  Fly   676 GQVNAFKDLKKRQIYNALINGKSLNLDLRLSILENKRFSMISKYES-VDDITMDDIKSFKENFHK 739

  Rat   933 QLFVEGLVQGNVTSTESMDFLRYVVDKLNFVPLEREMPVQFQVVELPSGHHLCKVRALNKGDANS 997
            :::|:||:|||.|..::.|.::.|:|......|:....:...::::|.|.:..:.:.||:.|:|:
  Fly   740 KMYVKGLIQGNFTEDQATDLMQKVLDTYKSEKLDNLSALDNHLLQIPLGSYYLRAKTLNEDDSNT 804

  Rat   998 EVTVYYQSGTRSLREYTLMELLVMHMEEPCFDFLRTKQTLGYHVYPTCRNTSGILGFSVTVGTQA 1062
            .:|.|||.|...|:...:|:|:.:.:|||.|:.|||::.|||.:....|...|:|.|.:|:.||.
  Fly   805 IITNYYQIGPSDLKMECIMDLVELIVEEPFFNQLRTQEQLGYSLGIHQRIGYGVLAFLITINTQE 869

  Rat  1063 TKYNSETVDKKIEEFLSSFEEKIENLTEDAFNTQVTALIKLKECEDTHLGEEVDRNWNEVVTQQY 1127
            ||:.::.|:::||.|.|...|.:..:::..|......||..|:..||.|.|||.|||:|:||::|
  Fly   870 TKHRADYVEQRIEAFRSRMAELVSQMSDTEFKNIRETLINGKKLGDTSLDEEVLRNWSEIVTKEY 934

  Rat  1128 LFDRLAHEIEALKSFSKSDLVSWFKAHRGPGSKMLSVHVVG------------------------ 1168
            .|:|:..:|:.|...:|.|::::...:.....:.|||.|||                        
  Fly   935 FFNRIETQIQMLSHLTKEDVLNFLNDNDKNNLRKLSVQVVGNHNQTSNSTAQASRSGSLSDLLDD 999

  Rat  1169 -YGKYELEEDGAPVCEDPNSREGMQLIYLPPSPLLAESTTP--ITDIRAFTATLSLFP 1223
             ......|.|.|....|....|           .|.||..|  |.||.||...|.:||
  Fly  1000 VQDNMANETDSAKPMTDKIRLE-----------FLGESDDPSSIKDIYAFKKDLYVFP 1046

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrdcXP_006238561.1 Ptr 290..1168 CDD:223956 297/886 (34%)
Peptidase_M16 290..416 CDD:279066 55/125 (44%)
Peptidase_M16_C 441..627 CDD:282978 59/187 (32%)
Peptidase_M16_M 632..913 CDD:292805 90/287 (31%)
Peptidase_M16_C 918..1100 CDD:282978 53/181 (29%)
CG10588NP_001287135.1 Ptr 27..980 CDD:223956 323/1084 (30%)
Peptidase_M16 85..214 CDD:279066 56/160 (35%)
Peptidase_M16_C 244..419 CDD:282978 57/174 (33%)
Peptidase_M16_M 436..720 CDD:292805 89/286 (31%)
Peptidase_M16_C 724..907 CDD:282978 53/182 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353808
Domainoid 1 1.000 173 1.000 Domainoid score I3595
eggNOG 1 0.900 - - E1_COG1025
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 621 1.000 Inparanoid score I842
OMA 1 1.010 - - QHG63000
OrthoDB 1 1.010 - - D1008844at2759
OrthoFinder 1 1.000 - - FOG0000548
OrthoInspector 1 1.000 - - otm45881
orthoMCL 1 0.900 - - OOG6_100422
Panther 1 1.100 - - O PTHR43690
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4190
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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