DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Man2a1 and LManII

DIOPT Version :9

Sequence 1:NP_037111.2 Gene:Man2a1 / 25478 RGDID:3038 Length:1148 Species:Rattus norvegicus
Sequence 2:NP_609408.1 Gene:LManII / 34437 FlyBaseID:FBgn0027611 Length:1080 Species:Drosophila melanogaster


Alignment Length:1131 Identity:287/1131 - (25%)
Similarity:469/1131 - (41%) Gaps:258/1131 - (22%)


- Green bases have known domain annotations that are detailed below.


  Rat   165 LQVFVVPHSHNDPGWLKTFNDYF--------RDKTQYIFNNMVLKLKEDSSRKFIWSEISYLAKW 221
            |.|.:|.|:|:|.|||||.:.|:        :...|||.:::|..|..|..::||:.|.::..||
  Fly    47 LNVHLVAHTHDDVGWLKTVDQYYYGSETKIQKAGVQYIIDSVVEALLRDPEKRFIYVESAFFFKW 111

  Rat   222 WDIIDNPK-KEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIEGHQWLEKNLGV--KPRS 283
            |. ...|| :||||.|::.|:||.:.|.|.|.|||||||.::|||...|.:.|....|.  :||.
  Fly   112 WK-EQKPKVQEAVKMLVEQGRLEFIGGAWSMNDEATTHYQSVIDQFSWGLRLLNDTFGECGRPRV 175

  Rat   284 GWAIDPFGHSPTMTYLLKRAGFSHMLIQRVHYSVKKHFSLQKTLEFFWRQNWDLGSTTDILCHMM 348
            ||.|||||||..|..:..:.||..|...|:.|..|....:.|..|..|..:.:||...|:....:
  Fly   176 GWQIDPFGHSREMASMFAQMGFDGMFFGRLDYQDKDERLMTKNAEMIWHGSANLGEEADLFSGAL 240

  Rat   349 PFYSYDIPH------TCGPDPKICCQFDFKRLPGGRYGCPWGVPPEAISPGNVQSRAQMLLDQYR 407
             :.:|..|.      .|...|.|    |.|..|                ..||:.|....||..:
  Fly   241 -YNNYQAPDGFCFDILCNDAPII----DGKHSP----------------DNNVKERIDTFLDFAK 284

  Rat   408 KKSKLFRTKVLLAPLGDDFRFSEYTEWDLQYRNYEQLFSYMNSQP--HLKVKIQFGTLSDYFDAL 470
            .:|:.:||..::..:|.||   .|....:.|:|.::|..|.|.:.  ...:.:.:.|.|.|..:|
  Fly   285 TQSQYYRTNNIIVTMGGDF---TYQAAQVYYKNLDKLIRYGNERQANGSNINLLYSTPSCYLKSL 346

  Rat   471 EKSVAAEKKGGQSVFPALSGDFFTYADRDDHYWSGYFTSRPFYKRMDRIMESRLRTAEILYHLAL 535
            ..:        ...:|..|.|||.||.....||:|||||||..||.:|.....|:..:.|..||.
  Fly   347 HDA--------GITWPTKSDDFFPYASDPHAYWTGYFTSRPTLKRFERDGNHFLQVCKQLSALAP 403

  Rat   536 KQAQKYKINKFLSSPHYTTLTEARRNLGLFQHHDAITGTAKDWVVVDYGTRLFQSLNSLEKIIGD 600
            |:.:::       .||   ||..|..||:.|||||||||.|:.|.:||..|:..:..:......:
  Fly   404 KKPEEF-------DPH---LTFMRETLGIMQHHDAITGTEKEKVALDYAKRMSVAFRACGATTRN 458

  Rat   601 SAFLLILKDKKLYQSDPSKAFLEMDTKQSSQDSLPKKNIIQLSAQEPRY-LVVYNPFEQERHSVV 664
            :...|.::.|...:...:|...|..|     .:|.......:|....|: |.:|||.....:..|
  Fly   459 ALNQLTVQSKDNVKDTSAKYVFEFKT-----CALLNITSCPVSEANDRFALTLYNPLAHTVNEYV 518

  Rat   665 SVRVNSATVKVLSDLGKAVE---VQVSAVWKDMR-TTSQAAYEVAFLA-HLPPLGLKVYKILESQ 724
            .:.|..:..:::.:.|..:|   |.:..|..|:: ..|.|.||:.||| ::|.||.:.|.:.:..
  Fly   519 RIPVPYSNYRIIDNKGVTLESQAVPIPQVLIDIKHRNSTAKYEIVFLATNIPALGYRTYYVEKLD 583

  Rat   725 SSSSHLADYFLYNNDGQAESGIFHMKNMVDSGDAIT-IENSFLTLGFDRSGLMEKVRRKEDNKQQ 788
            |:            :|...|     |.:.....::| |.||.:.||||.:|.:.:|  ..|...:
  Fly   584 ST------------EGNTRS-----KALPKRTSSVTVIGNSHIQLGFDTNGFLSEV--TADGLTR 629

  Rat   789 ELKVQFLWY--GTTNKRD----KSGAYLFLPDGQGQPYVSLRTPFVRVTRGRIYSDV-TCFLEHV 846
            .:..:||:|  ...|..:    .||||:|.|: :.:.:.:.....:.|.:|.:..:| ..|.:.:
  Fly   630 LVSQEFLFYEGAVGNNAEFLNRSSGAYIFRPN-ENKIHFATDQVEIEVYKGDLVHEVHQKFNDWI 693

  Rat   847 THKVRLYH------IQGIEGQSMEVSNIVDIRSVHNREIVMRISSKINNQNRYYTDLNGYQIQPR 905
            :..||:|:      .:.:.|.       :.|.....:|::.|.:|.|.:...:.||.||.::..|
  Fly   694 SQVVRVYNKDSYAEFEWLVGP-------IPIDDGIGKEVITRFNSDIASDGIFRTDSNGREMIKR 751

  Rat   906 RT------MAKL--PLQANVYPMSTMAYIQDAAHRLTLLSAQSLGASSMASGQIEVFMDRRLMQD 962
            :.      ..|:  .:..|.||::|...::|...|:.:|:.::.|.||:..|.:|:.:.|||::|
  Fly   752 KINHRDTWSVKINEAVAGNYYPITTKIDVEDDTARMAILTDRAQGGSSLKDGSLELMVHRRLLKD 816

  Rat   963 DNRGLGQGVH-----DNKITANLFRILLEK---RNGMNM-------EEDKKSPVSYPSLLSHM-- 1010
            |..|:|:.::     |..|......:...|   |.|:::       :.:|..|..  ...|:|  
  Fly   817 DAFGVGEALNETEYGDGLIARGKHHLFFGKSTDREGVSLKGIERLTQLEKLLPTW--KFFSNMED 879

  Rat  1011 ------TSAFLNHPFLPMVLSG---QLPSPAIEL------------------------------- 1035
                  .:||.|      :.||   .||.|...|                               
  Fly   880 YSADEWQTAFTN------IFSGISLVLPKPVHLLTLEPWHENQLLVRFEHIMENGEDASYSQPVQ 938

  Rat  1036 -------------------------LSEFRLLQ---------------SSLPCD-IHLVNLRTIQ 1059
                                     |.|.|.||               .|.|.: :||::..  :
  Fly   939 FNVKNVLSAFDVEGIRETTLDGNAWLDESRRLQFAPDPEEAAFNTYATFSQPAESVHLLSAE--K 1001

  Rat  1060 SKVGKGYSDEAALILH--------RKVFDCQLSSRAMGLPCSTTQGKMSIPKLFNNFAVESFIPS 1116
            ..:|..|:|||.....        |:..:.:...:..|....:|:|.      :|:|..:|    
  Fly  1002 PMLGVKYADEALPAGQLGAESNRIRRETETRQEKKDEGRSSKSTEGP------YNSFKSDS---- 1056

  Rat  1117 SLSLMHSPPDAQNTSEVSLSPMEIST 1142
                      :.....:.||||||.|
  Fly  1057 ----------SNQEYIIELSPMEIRT 1072

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Man2a1NP_037111.2 PLN02701 127..1148 CDD:178304 287/1131 (25%)
GH38N_Man2A1 164..507 CDD:212131 113/360 (31%)
Alpha-mann_mid 502..587 CDD:214875 37/84 (44%)
Glyco_hydro_38C 733..1142 CDD:285047 107/536 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1121..1148 7/22 (32%)
LManIINP_609408.1 GH38N_AMII_LAM_like 47..323 CDD:212121 98/300 (33%)
Alpha-mann_mid 370..445 CDD:214875 37/84 (44%)
Glyco_hydro_38C 502..957 CDD:285047 103/489 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1959
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.