DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Man2a1 and LManIII

DIOPT Version :9

Sequence 1:NP_037111.2 Gene:Man2a1 / 25478 RGDID:3038 Length:1148 Species:Rattus norvegicus
Sequence 2:NP_001285762.1 Gene:LManIII / 34203 FlyBaseID:FBgn0032066 Length:1003 Species:Drosophila melanogaster


Alignment Length:1098 Identity:270/1098 - (24%)
Similarity:455/1098 - (41%) Gaps:228/1098 - (20%)


- Green bases have known domain annotations that are detailed below.


  Rat   155 YEA-DEWDREPLQVFVVPHSHNDPGWLKTFNDYFRDK--------TQYIFNNMVLKLKEDSSRKF 210
            ||: .|.....:.:.:|||||:|.|||||.:.|:...        .||||:.:|.:|.:||.|:|
  Fly    26 YESCPETKSNMINIHLVPHSHDDLGWLKTVDQYYYGNKHNIQHAGVQYIFDTVVAELSKDSRRRF 90

  Rat   211 IWSEISYLAKWWDIIDNPKKEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIEGHQWLEK 275
            |..|..:.||||:.....||:.||:|:..|:||...|.|.|.|||..:|.::|||...|.::|..
  Fly    91 IQVETGFFAKWWEDQSETKKKLVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLND 155

  Rat   276 NLGV--KPRSGWAIDPFGHSPTMTYLLKRAGFSHMLIQRVHYSVKKHFSLQKTLEFFWRQNWDLG 338
            |.||  :||.||.||.||||.....:..:..|......|:..:.|........||..    ||..
  Fly   156 NFGVCGRPRVGWQIDAFGHSREQASMFAQMAFDGQFFARMDQNDKNKRVDNLGLEMV----WDAS 216

  Rat   339 STTDILCHMMPFYS---YDIPHTCGPDPKIC----CQFDFKRLPGGRYGCPWGVPPEAISPGNVQ 396
            .|.:    .|.|::   |:  |...| |..|    || |...:.|..|            ..||:
  Fly   217 ETLE----EMDFFTGMLYN--HYSAP-PGFCFDSLCQ-DDPIIDGKSY------------DNNVK 261

  Rat   397 SRAQMLLDQYRKKSKLFRTKVLLAPLGDDFRFSEYTEWDLQYRNYEQLFSYMNSQ--PHLKVKIQ 459
            ||....|:.....:..:|:..::.|:||||   :|....:.|:|.::|..|:|.:  ...|..|.
  Fly   262 SRVDDFLNYASNLAGYYRSNHIMVPMGDDF---QYENAYMNYKNMDKLIKYVNERQASGSKYNIF 323

  Rat   460 FGTLSDYFDALEKSVAAEKKGGQSVFPALSGDFFTYADRDDHYWSGYFTSRPFYKRMDRIMESRL 524
            :.|...|.::|.||:.:        ||..:.||..::.....:|:|:|||||..||.:|.....|
  Fly   324 YSTAGCYLNSLHKSLQS--------FPNKTQDFLPHSHEAKSFWTGFFTSRPTQKRFERDGNHIL 380

  Rat   525 RTAEILYHLA-LKQAQKYKINKFLSSPHYTTLTEARRNLGLFQHHDAITGTAKDWVVVDYGTRLF 588
            :.|:.|..|| |...:::|...:|           |:.:.:.|||||||||.|..|..||...|:
  Fly   381 QVAKQLSVLADLSGEEQHKDLDYL-----------RQIMAVMQHHDAITGTEKQEVSNDYDRLLY 434

  Rat   589 QSLNSLEKIIGDSAFLLILKDKKLYQSDPSKAFLEMD------TKQSSQDSLPKKNIIQLSAQEP 647
            .::........|:..:|..:....:||     .|:::      ||:::.|.:             
  Fly   435 DAILGGANTARDALRVLTNQPNGEFQS-----CLKLNISECAFTKENADDFM------------- 481

  Rat   648 RYLVVYNPFEQERHSVVSVRVNSATVKVLSDLGKAVEVQVSAV-WKDMR---TTSQAAYEVAFLA 708
              :.:|||........|.|.|...:.:|..:.|..|..::..| |:.:.   ..:...:|:.|  
  Fly   482 --VTLYNPLAHTSTQYVRVPVKEDSYQVTDEKGGLVASELVPVPWEVLSLEFRNNDTQHELVF-- 542

  Rat   709 HLPPLGLKVYKILESQSSSSHLADYFLYNND-----------------GQAESGIFHMKNM---- 752
                           ::|.:.:|.||:...|                 .:.||.:...|..    
  Fly   543 ---------------KASVNKIATYFIKKIDKTTEVDITVNTQTEQSVNEEESNVKVPKRFKKVH 592

  Rat   753 --------VDSGDAITIENSFLTLGFD-RSGLMEKVRRKEDNKQQELKVQFLWYGTTNKRDKSGA 808
                    :|..:.| ::||.:.|..| .:|.::.|  :.:...:::...|..|.|.    :|..
  Fly   593 SLKTDLETLDDQETI-VQNSLIKLVIDNNTGRLKTV--EMNGVSEDIDQTFGMYKTA----RSCH 650

  Rat   809 YLFLPDGQGQPYVSLRTPFVRVTRGRIYSDVTCFL-EHVTHKVRLYHIQGIEGQSME-VSNIVDI 871
            |:|..|...: .|.....|. |..|....:|...: |.::..:|:|  :|:.....| :...|.|
  Fly   651 YIFRQDADLE-LVEDAFDFT-VYDGESVKEVHQHVNEWISQVIRIY--EGVNRVEFEWLVGPVPI 711

  Rat   872 RSVHNREIVMRISSKINNQNRYYTDLNGYQIQPRR---------TMAKLPLQANVYPMSTMAYIQ 927
            .....:|||....|.|::...:|||.||.::..|.         .:::.|:..|.||:::...:|
  Fly   712 DDELGKEIVTIFKSGISSGGVFYTDSNGREMMRREKDKREDFSPDLSEQPVSGNYYPVTSRMALQ 776

  Rat   928 DAAHRLTLLSAQSLGASSMASGQIEVFMDRRLMQDDNRGLGQGVHDNKI------TANLFRILLE 986
            |::.|:.||:.:|.|.:|:..|::|:.:.||.:..|..|..:.:::.:.      ...||..|..
  Fly   777 DSSKRMVLLNDRSQGGASLEDGRLEMMLHRRHIFADGSGAAEAINEQQFGKGLIARGKLFLYLNA 841

  Rat   987 KRNGMNMEEDKKSPVSYPSLLSHMTSAFLNHPFLPMV-LSGQLPSPAIELLSEFRLLQSSLPCDI 1050
            ..:|....|             .:....::.||.... .|..:.|...:.||:|    :.||..:
  Fly   842 IEDGATASE-------------RVAEKEIHLPFWKFFSKSNNIQSDVTKTLSDF----NDLPQSV 889

  Rat  1051 HLVNLRTIQSKVGKGYS-DEAALILH---------------RKVFDCQLSSRAMGLPCSTTQGKM 1099
            ||:.|        :.|| ||..|.|.               |::||   ....:.:..:|..|.:
  Fly   890 HLLTL--------EPYSKDEILLRLENFLDQTEGNVVSFSIRQIFD---DLGGLEIRETTLDGNL 943

  Rat  1100 SIPKL------FNNFAVESFIPSSLSLMHSPPDAQNTSE-----VSLSPMEISTSRIR 1146
            .:..:      .:.......:|...:.:|.|..|..|.:     |:|.||:|.|..|:
  Fly   944 PLSDMKRLKFHHDGSGPSHSVPEYFTSLHKPLAADKTQDASEFSVTLKPMQIRTFIIK 1001

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Man2a1NP_037111.2 PLN02701 127..1148 CDD:178304 270/1098 (25%)
GH38N_Man2A1 164..507 CDD:212131 111/361 (31%)
Alpha-mann_mid 502..587 CDD:214875 32/85 (38%)
Glyco_hydro_38C 733..1142 CDD:285047 100/483 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1121..1148 11/31 (35%)
LManIIINP_001285762.1 GH38N_AMII_LAM_like 37..311 CDD:212121 97/300 (32%)
Alpha-mann_mid 358..433 CDD:286360 32/85 (38%)
Glyco_hydro_38C 603..998 CDD:285047 93/433 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1959
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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