DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kcna5 and Shawl

DIOPT Version :9

Sequence 1:NP_037104.1 Gene:Kcna5 / 25470 RGDID:2953 Length:602 Species:Rattus norvegicus
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:545 Identity:179/545 - (32%)
Similarity:257/545 - (47%) Gaps:143/545 - (26%)


- Green bases have known domain annotations that are detailed below.


  Rat   112 RVLINISGLRFETQLGTLAQFPNTLLGDPAKRLHYFDPLRNEYFFDRNRPSFDGILYYYQSGGRL 176
            |:::|:||:|:||...||.:.|.|.|....:.|..:||:.|||||||:...|..||.||:: |:|
  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRT-GKL 69

  Rat   177 RRPVNVSLDVFADEIRFYQLGDEAMER--------FREDEGFIK-------EEEKPLPR------ 220
            ..|.:|...:|.:|:.|:.|....:|.        .|:.:..:.       |.|||...      
  Fly    70 HYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQIARLF 134

  Rat   221 -----------NEFQR---QVWLIFEYPESSGSARAIAIVSVLVILISIITFCLETLPEFRDERE 271
                       |.:||   ::|.:|:.|.||..|:.:|.:||..|.:|:|:|||:|.|.||.:..
  Fly   135 GFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFRVDLP 199

  Rat   272 LLRH---------PP-------VPPQ----------PPAPAPG---------------------- 288
            ...|         ||       .|||          ||:.:.|                      
  Fly   200 SGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNFTASGQA 264

  Rat   289 -----------------INGSV------------SGALSSGPTVAPLLPRTLADP---FFIVETT 321
                             ||||:            :|....|      ...|...|   ||.||..
  Fly   265 TPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHG------WIETYGQPHEAFFYVELV 323

  Rat   322 CVIWFTFELLVRFFACPSKAEFSRNIMNIIDVVAIFPYFITLGTELAEQQPGGGGQNGQQAMSLA 386
            |.:||..|:::|....|:..:|.::.:||||..|...::..:...:.|.              ..
  Fly   324 CNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRMGEY--------------TG 374

  Rat   387 ILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASMRELGLLIFFLFIGVILFSSAVYFAE--ADNH 449
            :|....:||:.|:|||:|||.||:||..|.:||.:||.||:|||.:|::.|:|..|:||  .||.
  Fly   375 LLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNP 439

  Rat   450 GSHFSSIPDAFWWAVVTMTTVGYGDMRPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY-H 513
            .:.|.|||...|||:||||||||||:.|.|..|..||:|||:|||||||||||||||||:.|| |
  Fly   440 DNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSH 504

  Rat   514 RET----DHEEQAALKEEQGNQRRE 534
            .:.    ..:.:..|..||..::||
  Fly   505 TQARSKLPKKRRRVLPVEQPRRKRE 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kcna5NP_037104.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 58..107
BTB 113..207 CDD:197585 36/101 (36%)
BTB_2 113..204 CDD:280393 35/98 (36%)
Ion_trans 305..515 CDD:278921 96/215 (45%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 407..420 6/12 (50%)
Ion_trans_2 429..506 CDD:285168 48/78 (62%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 469..474 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 523..543 5/12 (42%)
PDZ-binding 600..602
ShawlNP_001097131.2 BTB 7..99 CDD:197585 35/92 (38%)
BTB_2 7..97 CDD:280393 35/90 (39%)
Ion_trans 307..506 CDD:278921 96/212 (45%)
Ion_trans_2 <449..499 CDD:285168 37/49 (76%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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