Protein Alignment Gabrb1 and GluClalpha

DIOPT Version :9

• Sequence 1: NP_037088.1
• Gene: Gabrb1 / 25450
• RGDID: 2649
• Length: 474
• Species: Rattus norvegicus
• Sequence 2: NP_001287408.1
• Gene: GluClalpha / 42350
• FlyBaseID: FBgn0024963
• Length: 463
• Species: Drosophila melanogaster
• Alignment Length: 477
• Identity: 162/477 - (33%)
• Similarity: 251/477 - (52%)
• Gaps: 57/477 - (11%)

  Rat    20 AMVCCAHSSNEPSNMSY---VKETVDRLLKG--YDIRLRPD----FGGPPVDVGMRIDVASIDMV 75
            |.:|.|..:|. :.:::   .|:.:|::|..  ||.|:||.    ..||.| |.:.|.|.||..:
  Fly    14 ASLCSASLANN-AKINFREKEKKVLDQILGAGKYDARIRPSGINGTDGPAV-VRVNIFVRSISKI 76

  Rat    76 SEVNMDYTLTMYFQQSWKDKRLSYSGIP-----LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVT 135
            .:|.|:|::.:.|::.|.|:||.:..|.     |.||..|||    |:||.:|.|:|:...|.:.
  Fly    77 DDVTMEYSVQLTFREQWTDERLKFDDIQGRLKYLTLTEANRV----WMPDLFFSNEKEGHFHNII 137

  Rat   136 VKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAV 200
            :.|..||:.|:|:|||.:||:.|.||.|:|:.||||.|.|:|.:.|||:||:|:.|.|..|: .|
  Fly   138 MPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGD-PV 201

  Rat   201 TGVNKIELPQFSIVDYKMVSKKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSF 265
            ..|..:.||:|::..:.......:..||.|..|.:....||...|:::|.|:|..::.|:|||||
  Fly   202 QVVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSF 266

  Rat   266 WINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYI 330
            |::..|..|||:||:||:|||.|.::.:..:||.:.|.||||::...|..|||.||||:|.|||
  Fly   267 WLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNY- 330

  Rat   331 FFGKGPQKKGASKQDQSANEKNKLEMNKVQVDAHGNILLSTLEIRNETSGSEVLTGVSDPKATMY 395
                      ||:...:....:|..|.|.:.|         ||..:..:.|::|...|:....|.
  Fly   331 ----------ASRSGSNKANMHKENMKKKRRD---------LEQASLDAASDLLDTDSNATFAMA 376

  Rat   396 SYDSASIQYRKPLSSREGFGRGLDRHGVPGKGRIRRRASQLKVKIPDL---------TDVNSIDK 451
            |..:.....:|||....|....|::       |::........|.|:.         |....||.
  Fly   377 SQFARGGGQQKPLVRHPGDPLALEK-------RLQCEVHMQAPKRPNCCKTWLSKFPTRSKRIDV 434

  Rat   452 WSRMFFPITFSLFNVVYWLYYV 473
            .||:.||:.|:|||:|||..|:
  Fly   435 ISRITFPLVFALFNLVYWSTYL 456

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gabrb1	NP_037088.1	LIC	9..472	CDD:273305	161/474 (34%)
GluClalpha	NP_001287408.1	LIC	3..455	CDD:273305	161/474 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910