Protein Alignment Gabrb1 and Rdl

DIOPT Version :9

• Sequence 1: NP_037088.1
• Gene: Gabrb1 / 25450
• RGDID: 2649
• Length: 474
• Species: Rattus norvegicus
• Sequence 2: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Alignment Length: 554
• Identity: 188/554 - (33%)
• Similarity: 271/554 - (48%)
• Gaps: 135/554 - (24%)

  Rat    37 VKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDKRLSYSG 101
            :...:|.....||.|:||::|||||:||:.:.|.||..:|||.||:||..||:|.|.|.||:|..
  Fly    59 ISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRK 123

  Rat   102 IP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMD 164
            .|  ..|::.:.....:|||||:|:|:|:|:.|..|..|..||:|..|::...:|:|.||:|.|:
  Fly   124 RPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMN 188

  Rat   165 LRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVDYKMVSKKVEFTTGA 229
            |:.:|:|.|.|.:||||:|||..||.::|..|..:|...:::|||||.::.::..:.::..|||.
  Fly   189 LQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGN 253

  Rat   230 YPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLR 294
            |.||:...:..|::||:::|.|:||.||.|:||||||:|.:|:.||||||:||||||||:.:...
  Fly   254 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTN 318

  Rat   295 ETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYI----------FFG-------KGPQKKGAS 342
            ..||||.|||:||:||..|||.||.:|||||.|.|:          |..       |..|..||:
  Fly   319 AALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGAN 383

  Rat   343 KQDQSANEKNK--------------------------LEMNKVQVDAHGN--------------- 366
            :|..:.|....                          :.|.......||:
  Fly   384 QQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTV 448

  Rat   367 ----ILLSTLEIRNETSG--------SEVLTGVSDPKATMYSYDSASIQYRK------------- 406
                |..|.::....|.|        .||...|.||||           :.|
  Fly   449 SNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKA-----------HSKGGTLENTVNGGRG 502

  Rat   407 -PLSSREGFGRGLDRHGVPGKG----------------------RIRRRASQLKVKIPDLTDVN- 447
             |.|...|.|:|   .|.||.|                      .:.......|||     |:|
  Fly   503 GPQSHGPGPGQG---GGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVK-----DINK 559

  Rat   448 -------SIDKWSRMFFPITFSLFNVVYWLYYVH 474
                   .|||:||:.||:.|..||::||:.|:|
  Fly   560 LLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH 593

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gabrb1	NP_037088.1	LIC	9..472	CDD:273305	186/550 (34%)
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	73/182 (40%)
		Neur_chan_memb	274..588	CDD:397193	97/332 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D226476at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_101786
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.720