DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cdr1 and par-1

DIOPT Version :10

Sequence 1:NP_593874.1 Gene:cdr1 / 2543666 PomBaseID:SPAC644.06C Length:593 Species:Schizosaccharomyces pombe
Sequence 2:NP_995894.2 Gene:par-1 / 2768852 FlyBaseID:FBgn0260934 Length:1170 Species:Drosophila melanogaster


Alignment Length:634 Identity:183/634 - (28%)
Similarity:279/634 - (44%) Gaps:104/634 - (16%)


- Green bases have known domain annotations that are detailed below.


pombe     9 IGVWRLGKTLGTGSTSCVRLAKHAKTGDLAAIKII------PIRYASIGMEILMMRLLRHPNILR 67
            ||.::|.||:|.|:.:.|:||||..||...|||||      |.....:..|:.:|::|.||||::
  Fly   250 IGKYKLIKTIGKGNFAKVKLAKHLPTGKEVAIKIIDKTQLNPGSLQKLFREVRIMKMLDHPNIVK 314

pombe    68 LYDVWTDHQHMYLALEYVPDGELFHYIRKHGPLSEREAAHYLSQILDAVAHCHRFRFRHRDLKLE 132
            |:.|....:.:||.:||...||:|.|:..||.:.|:||.....||:.||.:||:.|..|||||.|
  Fly   315 LFQVIETEKTLYLIMEYASGGEVFDYLVLHGRMKEKEARVKFRQIVSAVQYCHQKRIIHRDLKAE 379

pombe   133 NILIKVNEQQIKIADFGMATVEPNDSCLENYCGSLHYLAPEIVSHKPYRGAPADVWSCGVILYSL 197
            |:|:. :|..|||||||.:......|.|:.:|||..|.|||:...|.|.|...||||.|||||:|
  Fly   380 NLLLD-SELNIKIADFGFSNEFTPGSKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTL 443

pombe   198 LSNKLPFGGQNTDVIYNKIRHGAYDLPSSISSAAQDLLHRMLDVNPSTRITIPEVFSHPFLMGCT 262
            :|..|||.|.....:..::..|.|.:|..:|:..::||.:.|.:||:.|.::..:....::    
  Fly   444 VSGSLPFDGSTLRELRERVLRGKYRIPFYMSTDCENLLRKFLVLNPAKRASLETIMGDKWM---- 504

pombe   263 SLSSMDSTTPPTPSLSIDEIDPLVVDCMCVLWKKSSSKKVVRRLQQRDDNDEKYVYKVLSEILRD 327
            ::...:....|......|..||..::.:..:....|.                 :...||::..|
  Fly   505 NMGFEEDELKPYIEPKADLADPKRIEALVAMGYNRSE-----------------IEASLSQVRYD 552

pombe   328 DMLKKQRFDENKYLSLYDLIHDNNLFTKASISTTSLVKSNVSTN----SRKSSNFEDELARRVSS 388
            |:..       .||.|.....|..  :..|.|.:||...|:|.|    :..|::.:....|.|..
  Fly   553 DVFA-------TYLLLGRKSTDPE--SDGSRSGSSLSLRNISGNDAGANAGSASVQSPTHRGVHR 608

pombe   389 PLSALNQMSQSPIPIRVSSDKDYDSYACHEVVS--------NPSTLDDDYNYMFVCPPEEYTYST 445
            .:||     .|..|.|.:|.....:.|...|.:        |||   ::|| ......:..:..:
  Fly   609 SISA-----SSTKPSRRASSGVGPTNAAATVAAATGAVGAVNPS---NNYN-AAGSAADRASVGS 664

pombe   446 DNVRTDSLDLQSLP--TPTLEQLESVPFNRYGYVRIFPSTTLSSTASGYYTPDSLSTPEPSIDGL 508
            :..|.:::|..::.  |..|......|.:....:.....|||:|.|.    |.:.:..:|:....
  Fly   665 NFKRQNTIDSATIKENTARLAAQNQRPASATQKMLTTADTTLNSPAK----PRTATKYDPTNGNR 725

pombe   509 TNLDDVQVGGFVQG-SGNQNRR------PISFPVISNMQPNITN----VRSASAPLCS----SPV 558
            |          |.| ||...||      ..|....:|:.|..||    :|.|||...|    ..|
  Fly   726 T----------VSGTSGIIPRRSTTLYEKTSSTEKTNVIPAETNLFDRLRMASAVKSSRHFPRNV 780

pombe   559 PSR-RYSQYATNAR------YTPRKVSSG--------SVLRKISSFFRK 592
            ||| .:....|.||      |:....:||        |...|:||.|.|
  Fly   781 PSRSTFHSGQTRARNNTALEYSGTSGASGDSSHPGRMSFFSKLSSRFSK 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdr1NP_593874.1 STKc_BRSK1_2 10..258 CDD:270983 101/253 (40%)
par-1NP_995894.2 STKc_MARK 252..504 CDD:270974 100/252 (40%)
UBA_MARK_Par1 525..563 CDD:270522 10/61 (16%)
MARK1-3_C 839..936 CDD:213381
Blue background indicates that the domain is not in the aligned region.

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