DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cdc48 and TER94

DIOPT Version :9

Sequence 1:NP_593287.2 Gene:cdc48 / 2542744 PomBaseID:SPAC1565.08 Length:815 Species:Schizosaccharomyces pombe
Sequence 2:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster


Alignment Length:803 Identity:554/803 - (68%)
Similarity:676/803 - (84%) Gaps:10/803 - (1%)


- Green bases have known domain annotations that are detailed below.


pombe    23 PKDTY-SAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKD 86
            |||:: ..||.|||||::|.:||.|:|::|.||||||::||...|:.|||||||||::||||||:
  Fly    24 PKDSFDKREDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGKRRKE 88

pombe    87 TVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLF 151
            ||.|||:|:...|...|:||||||||.|.|.|:|::..|||:||.:|:.:||:.::.||:||:||
  Fly    89 TVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLF 153

pombe   152 DVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEES 216
            ::||||||:||||||..||.|:||.:||.:|||||...|:.:.||:.:|:|..:|:||.||:||.
  Fly   154 EIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEE 218

pombe   217 SLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANE 281
            ||..||||||||||:|:|||:|:||||||||.|||:||:||||||||||||||||||:|||||||
  Fly   219 SLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANE 283

pombe   282 TGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVS 346
            ||||||||||||||||:|||||||||||||||||||||||||||||:|||||:||:||||||:||
  Fly   284 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVS 348

pombe   347 QLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLA 411
            ||||||||||..|:::||||||||||||||||||||||||:|:||||.|||||:||||||||||.
  Fly   349 QLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLH 413

pombe   412 DDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNFRFAL 476
            |||||||||||:||:||:||||||||||:||||||||:|||::|:||||||.||.|||:|||:|:
  Fly   414 DDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLASLAVTMENFRYAM 478

pombe   477 GSSNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPG 541
            ..|:|||||||||||||..|.||||||.||:||:|.||.||.:.:|||:||:.||:||||:||||
  Fly   479 TKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPG 543

pombe   542 TGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKAR 606
            .|||||||||||||.||||||||||||:|||||||:||||||||||:|||||:|.||||||||||
  Fly   544 CGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKAR 608

pombe   607 GASAGDSGG-GDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEE 670
            |.:.||:|| .|||:||:||||||:.:|||||:||||||||.||||::||||||||||:||||::
  Fly   609 GGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDK 673

pombe   671 ARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRENETGEA 735
            :|.:||:..||.:|:|::|||..:||.|.|||||||..:.|||.||||:.:||.:|:||.|..|.
  Fly   674 SREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAEN 738

pombe   736 PADDVVMDEDASVSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQFDSADSN 799
            ....:.||||..|.::...|.|||||.|||||||.::|:||.:|..|..|||. ..|:|.....|
  Fly   739 QNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGQNFRFPGQTGN 803

pombe   800 TNGP-------SFGNDGADDLYA 815
            |:|.       |.|::|.||||:
  Fly   804 TSGSGNNLPVNSPGDNGDDDLYS 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdc48NP_593287.2 CDC48_N 45..127 CDD:280513 48/81 (59%)
CDC48 58..782 CDD:273521 517/724 (71%)
CDC48_2 151..209 CDD:215011 31/57 (54%)
AAA 261..390 CDD:278434 116/128 (91%)
AAA 534..666 CDD:278434 108/132 (82%)
TER94NP_001097249.1 CDC48 47..787 CDD:273521 526/739 (71%)
CDC48_N 47..129 CDD:280513 48/81 (59%)
CDC48_2 153..213 CDD:215011 33/59 (56%)
AAA 263..392 CDD:278434 116/128 (91%)
AAA 536..669 CDD:278434 108/132 (82%)
Vps4_C <741..783 CDD:286426 21/41 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 237 1.000 Domainoid score I475
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5168
Inparanoid 1 1.050 1104 1.000 Inparanoid score I24
OMA 1 1.010 - - QHG60945
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 1 1.000 - - oto101705
orthoMCL 1 0.900 - - OOG6_100525
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R182
SonicParanoid 1 1.000 - - X1760
TreeFam 1 0.960 - -
1413.860

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