Protein Alignment rrp9 and U3-55K

DIOPT Version :10

• Sequence 1: NP_594143.1
• Gene: rrp9 / 2541476
• PomBaseID: SPAC2E1P5.05
• Length: 524
• Species: Schizosaccharomyces pombe
• Sequence 2: NP_001014529.1
• Gene: U3-55K / 3346176
• FlyBaseID: FBgn0053505
• Length: 484
• Species: Drosophila melanogaster
• Alignment Length: 552
• Identity: 166/552 - (30%)
• Similarity: 273/552 - (49%)
• Gaps: 116/552 - (21%)

pombe     1 MSDPFFTRP---EHRKRKARSATSKREKENQKLERNG-------------------PANEDLASI 43
            ||..||.:|   ..:|||..:||:|    .:.|::.|                   |..||....
  Fly     1 MSSSFFLKPGAKGTKKRKNPAATTK----GKPLKKGGKPGKSTPAAGGPVPKKQRRPKEEDEEIA 61

pombe    44 SSESEFN---GFEDEI----DEENEDTYETAAEKRLRLAREYLDEVKNELVEDGGFDAKEVDREL 101
            |.:.|:|   |.:|..    .:|.|:  ||..:||||||::||.|::.:..|      :..||||
  Fly    62 SDDEEYNSDLGGDDNTLAFSSDEGEE--ETPQDKRLRLAKQYLSEIEKQEAE------RAEDREL 118

pombe   102 LAS---RLKEDVLEKKGQMYLDYTSKINPDVKIETAQL--RGRHMRPLVGVVAYEN--FVYSADK 159
            ..|   ||:.:.|:..|::..:....:.   ..|::::  ...|..|:..:....:  |:|:..|
  Fly   119 AQSVEQRLQTEYLDSVGKLRRNIAGSLK---ACESSRILKHKLHHTPICALALSPDGKFLYTGAK 180

pombe   160 SGLIQKW-----EALQEKDT-ENRENDDHEIGKAIKLHFRPIKFSRSRRGENDHVKEITCLAISN 218
            |..:.||     :.|::.|. .:||  :.|.||..:.|                   :..:.:|:
  Fly   181 SQFLLKWCTETGKVLEKSDVLSHRE--EPETGKKRRSH-------------------VISICLSS 224

pombe   219 DGRWIVTGGLDHRIVIRDSVTLEPQHCWKHHRDAVMGLAMRRGTNEMFSCSADRSIKVWSLDQMS 283
            |.:::........|.|....|::.....|.|||:|.||..|:||::::|.:.|||:|:||||:|:
  Fly   225 DMKYLALAEGGPHIQIWCPQTMKHIKTLKGHRDSVAGLVFRKGTHDLYSAAKDRSVKIWSLDEMA 289

pombe   284 YIETLFGHQDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQLVFRSGGTSMKATAGYMEGSVD 348
            |:|:|||||..:..:|||:|||.::.||.|.:.|:|||.|||||::.          |:.: |::
  Fly   290 YVESLFGHQTAVTSIDALSRERAITAGGSDCSLRIWKITEESQLIYN----------GHKD-SIE 343

pombe   349 CVAMIDEDHFVTGSDNGVIALWSVQRKKPLFTYPLAHGLDPILAPGRHSAETSPDPVTIPPQPRW 413
            ||..|:::|||:|..:|.|.|||..:|||:.|..||||:      |.:..            ..|
  Fly   344 CVKYINDEHFVSGGMDGAIGLWSALKKKPICTTQLAHGV------GENGV------------ANW 390

pombe   414 ITSLAAIPYSNLFASGSWDGNIRLWKIAEGLRSFEPLTIATPLSVYGCINSLSLSLQGKGKQSEV 478
            ||::|.:..::|.|:||.||.:|||:.....|.   :.:...:|:.|.||.|:.:..|.
  Fly   391 ITAIAVVVNTDLVATGSCDGCVRLWQTNPNARK---MNLIQSISIAGFINGLAFNADGS------ 446

pombe   479 RVFAACGRETRVGRWKTLRGIPNSGFVFNIPL 510
            ::|.|.|:|.|:|||..|:...|...|.::.|
  Fly   447 KLFVATGQEHRLGRWWRLKEAKNQVVVLDVKL 478

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rrp9	NP_594143.1	WD40	<207..439	CDD:475233	85/231 (37%)
		WD40 repeat	211..248	CDD:293791	5/36 (14%)
		WD40 repeat	254..290	CDD:293791	18/35 (51%)
		WD40 repeat	295..340	CDD:293791	18/44 (41%)
		WD40 repeat	348..407	CDD:293791	21/58 (36%)
U3-55K	NP_001014529.1	WD40	156..416	CDD:475233	101/309 (33%)
		WD40 repeat	163..203	CDD:293791	8/39 (21%)
		WD40 repeat	218..254	CDD:293791	5/35 (14%)
		WD40 repeat	259..295	CDD:293791	18/35 (51%)
		WD40 repeat	302..336	CDD:293791	18/33 (55%)
		WD40 repeat	342..379	CDD:293791	16/36 (44%)
		WD40 repeat	391..431	CDD:293791	13/42 (31%)
		YncE	<420..477	CDD:442618	18/65 (28%)
		WD40 repeat	436..461	CDD:293791	10/30 (33%)