DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cntn2 and sdk

DIOPT Version :9

Sequence 1:NP_037016.2 Gene:Cntn2 / 25356 RGDID:3821 Length:1040 Species:Rattus norvegicus
Sequence 2:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster


Alignment Length:1129 Identity:276/1129 - (24%)
Similarity:433/1129 - (38%) Gaps:195/1129 - (17%)


- Green bases have known domain annotations that are detailed below.


  Rat     5 ARKKASLLLLVLATVALVSSPGWSFAQGTPATFGPIFEEQPI------------GLLFPEESAED 57
            ::.|.:.||.||..:....|..:.:|.........|.::|.:            |.:..|.|.: 
  Fly    28 SQPKLASLLAVLVLLCYCDSCFFCYADANLQQQNSIVQQQQLQAPRFTTHPSSSGSIVSEGSTK- 91

  Rat    58 QVTLACRARASPPATYRWKMNGTDMNLEPGSRHQLMGGNLVIMSPTKTQDAGVYQCLASNPVGTV 122
              .|.|.|...|..||||..:|..:.       ............|:.:|||.|||:|.|..|::
  Fly    92 --ILQCHALGYPQPTYRWLKDGVPVG-------DFSSSQFYRFHSTRREDAGSYQCIARNDAGSI 147

  Rat   123 VSKEAVLRFGFLQEFSKEERDPVKTHEGWGVMLPCNPPAHYPGLSYRWLLNEFP-NFIPTDGRHF 186
            .|:::.:...::..|.......:....|...:....|....|..|..|...:.| |:        
  Fly   148 FSEKSDVVVAYMGIFENTTEGRLTVISGHPAIFDMPPIESIPVPSVMWQSEDGPLNY-------- 204

  Rat   187 VSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSV--------FSKFAQLNLAAEDPRL-FAPS 242
                  ::..|.|:|:.|...|........:..|::        .|.|..||::. ||.: .||.
  Fly   205 ------DIKYAFTHANQLIILSADENDRKGYRAKAINTQLGKEESSAFVHLNVSG-DPYIEVAPE 262

  Rat   243 IKARFPPETYALVGQQVT-LECFAFGNPVPRIK--WRKVDG----------SLSPQWATAEPTLQ 294
            |..| |.:....||..|. |:|.|...|:..::  |.| ||          :|:..|   ..||.
  Fly   263 IIVR-PQDVKVKVGTGVVELQCIANARPLHELETLWLK-DGLAVETAGVRHTLNDPW---NRTLA 322

  Rat   295 IPSVSFEDEGTYECEAE-NSKGRDTV--QGRIIVQAQPEWLKVI-SDTEADIGSNLRWGCAAAGK 355
            :...:....|.|.|:.. .|.|...|  ..|:.:...|.:...: ::|..:.|..::..|...|:
  Fly   323 LLQANSSHSGEYTCQVRLRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCDVVGE 387

  Rat   356 PRPMVRWLRNGEPLASQNRVE----VLAGD--LRFSKLSLEDSGMYQCVAENKHGTIYAS----- 409
            |.|.|:|.||.|.:.:  .:|    .|..|  |...||.|:|:.|:||:|.|:.|...||     
  Fly   388 PTPQVKWFRNAESVDA--HIESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRV 450

  Rat   410 ----AELAVQALAPD------------------------------FRQNPVRRLIP----AARGG 436
                |:..|:.||..                              |...|:..|.|    |..|.
  Fly   451 KTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGK 515

  Rat   437 EISILCQPRAAPKATILW-SKGTEILGNSTRVTVTSDGTLIIRNISRSDEGKYTCFAENFMGKAN 500
            :.:|.|:...:|...|.| ...|:::..|:||.:...|.|:|.||...|.|.|.|...|..|...
  Fly   516 DATISCRAVGSPNPNITWIYNETQLVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAGSVK 580

  Rat   501 STGILSVRDATKITLAPSSADINVGDNLTLQCHASHDPTMDLTFTWTLDDFPIDFDKPGGHYRRA 565
            ....|||...|:|...|....:.:|...||||..|.||::.....|               ||..
  Fly   581 GEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDW---------------YREG 630

  Rat   566 SAKETI-----------GDLTILNAQLRHGGKYTCMAQTVVDGTSKEATVLVRGPPGPPGGVVVR 619
            .:...|           |.|.|...:....|.|.|:..:.....::.|.:.|...|.||..|.|.
  Fly   631 QSSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPSNVKVE 695

  Rat   620 DIGD---TTVQLSWSRGFDNHSPIAKYTLQAR--------TPPSGKWKQVRTNPVNIEGNAETAQ 673
            .:.:   .::.:||:.|||.:|||:|:.:|.|        ..|...|   .|...|:..:.....
  Fly   696 RLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSELGPVPDPLLNW---ITELSNVSADQRWIL 757

  Rat   674 VLGLMPWMDYEFRVSASNILGTGEPSGPSSKIRTKEAVPSVAPSGLSGGGGAPGELIINWTPVSR 738
            :..|.....|:|||||.|.:|.|.||.||:.:...:..||..|.|..|...:..|:|..|.|...
  Fly   758 LENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLE 822

  Rat   739 EYQNGDGFGYLLSFRRQGSSS--WQTARVPGADAQYFVYGNDSIQPYTPFEVKIRSYNRRGDGPE 801
            |::||...||:|.:|..|.::  |....:.....:.|:.  ..:..:..:.|:|.:||..|.|..
  Fly   823 EHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLI--QELITWKDYIVQIAAYNNMGVGVY 885

  Rat   802 SLTALVYSAEEEPRVAPAKVWAKGSSSSEMNVSWEPV-LQDMNGILLGYEIRYWKA----GDNEA 861
            :..:.:.:.|..|...|..|..:..:|:.....|.|. .|.:|||..||:|:.|:.    |:...
  Fly   886 TEGSKIKTKEGVPEAPPTNVKVEAINSTAARCRWTPPNPQQINGINQGYKIQAWQRRLIDGEWRD 950

  Rat   862 AADRVRTAG---LDTSARVT----GLNPNTKYHVTVRAYNRAGTGPASPSADAMTVKPPPRRPPG 919
            ...|::|..   :|..|..|    ||...|:|:::|..:...|.|.||.....||:...|....|
  Fly   951 IERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTG 1015

  Rat   920 NISWTFSSSSLSLKWDPVVPLRNESTVTGYKMLYQ---------------NDLHPTPT-LHLTSK 968
            ......|..|:.:.|.|  |..:...:|||.:.||               :|...|.. |..|:.
  Fly  1016 LHFDDVSDRSVKVLWAP--PRASNGILTGYTVRYQVKDRPDTLKSFNLTADDTELTVNQLQATTH 1078

  Rat   969 NWIEIPVPEDIGHALVQIRTTGPG 992
            .|.||.....:|..:.:..|...|
  Fly  1079 YWFEIVAWTRVGSGIPKTATIQSG 1102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cntn2NP_037016.2 Ig 37..133 CDD:416386 25/107 (23%)
Ig strand A 40..44 CDD:409353 1/3 (33%)
Ig strand A' 47..52 CDD:409353 1/4 (25%)
Ig strand B 58..66 CDD:409353 2/7 (29%)
Ig strand C 71..77 CDD:409353 4/5 (80%)
Ig strand C' 79..82 CDD:409353 1/2 (50%)
Ig strand D 89..93 CDD:409353 0/3 (0%)
Ig strand E 95..101 CDD:409353 0/5 (0%)
Ig strand F 108..117 CDD:409353 6/8 (75%)
Ig strand G 120..133 CDD:409353 2/12 (17%)
Ig2_Contactin-2-like 141..230 CDD:409392 15/97 (15%)
Ig strand B 153..157 CDD:409392 0/3 (0%)
Ig strand C 167..171 CDD:409392 1/3 (33%)
Ig strand E 192..196 CDD:409392 0/3 (0%)
Ig strand F 206..211 CDD:409392 1/4 (25%)
Ig strand G 224..227 CDD:409392 1/2 (50%)
Ig 241..326 CDD:416386 26/100 (26%)
Ig strand A 241..246 CDD:409353 2/4 (50%)
Ig strand A' 249..254 CDD:409353 0/4 (0%)
Ig strand B 257..266 CDD:409353 3/9 (33%)
Ig strand C 272..276 CDD:409353 0/5 (0%)
Ig strand C' 279..281 CDD:409353 2/11 (18%)
Ig strand E 291..296 CDD:409353 2/4 (50%)
Ig strand F 304..312 CDD:409353 3/8 (38%)
Ig strand G 315..326 CDD:409353 3/12 (25%)
Ig4_Contactin-2-like 330..414 CDD:143205 28/99 (28%)
Ig strand B 346..350 CDD:143205 0/3 (0%)
Ig strand C 359..363 CDD:143205 1/3 (33%)
Ig strand E 380..384 CDD:143205 2/5 (40%)
Ig strand F 394..399 CDD:143205 3/4 (75%)
Ig strand G 407..410 CDD:143205 2/11 (18%)
Ig5_Contactin 419..507 CDD:409358 27/122 (22%)
Ig strand B 438..442 CDD:409358 1/3 (33%)
Ig strand C 451..455 CDD:409358 2/4 (50%)
Ig strand E 473..477 CDD:409358 2/3 (67%)
Ig strand F 487..492 CDD:409358 2/4 (50%)
Ig strand G 500..503 CDD:409358 0/2 (0%)
Ig 509..605 CDD:416386 22/106 (21%)
Ig strand A 509..515 CDD:409353 2/5 (40%)
Ig strand A' 518..523 CDD:409353 0/4 (0%)
Ig strand B 526..534 CDD:409353 4/7 (57%)
Ig strand C 543..547 CDD:409353 0/3 (0%)
Ig strand D 568..571 CDD:409353 0/2 (0%)
Ig strand E 572..576 CDD:409353 2/3 (67%)
Ig strand F 585..592 CDD:409353 3/6 (50%)
Ig strand G 599..603 CDD:409353 0/3 (0%)
FN3 620..707 CDD:238020 29/97 (30%)
FN3 728..802 CDD:238020 20/75 (27%)
Cell attachment site. /evidence=ECO:0000255 796..798 0/1 (0%)
FN3 817..909 CDD:238020 28/103 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 895..921 8/25 (32%)
sdkNP_001284756.1 Ig 71..157 CDD:299845 23/95 (24%)
I-set 72..150 CDD:254352 22/87 (25%)
Ig 172..245 CDD:299845 13/86 (15%)
IG_like 280..356 CDD:214653 19/79 (24%)
Ig 280..343 CDD:299845 15/66 (23%)
IG_like 375..450 CDD:214653 26/76 (34%)
Ig 378..447 CDD:143165 25/70 (36%)
Ig 506..587 CDD:299845 24/80 (30%)
IG_like 506..587 CDD:214653 24/80 (30%)
I-set 592..682 CDD:254352 21/104 (20%)
Ig 595..682 CDD:299845 20/101 (20%)
FN3 686..789 CDD:238020 34/105 (32%)
FN3 798..893 CDD:238020 23/96 (24%)
FN3 901..1005 CDD:238020 28/103 (27%)
fn3 1011..1094 CDD:278470 19/84 (23%)
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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