DRSC/TRiP Functional Genomics Resources

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Protein Alignment CADM2 and syg-2

DIOPT Version :9

Sequence 1:XP_016861551.1 Gene:CADM2 / 253559 HGNCID:29849 Length:449 Species:Homo sapiens
Sequence 2:NP_001309674.1 Gene:syg-2 / 181561 WormBaseID:WBGene00007750 Length:1230 Species:Caenorhabditis elegans


Alignment Length:482 Identity:99/482 - (20%)
Similarity:180/482 - (37%) Gaps:102/482 - (21%)


- Green bases have known domain annotations that are detailed below.


Human    32 LHQGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSL--QWSNPAQQTLYFDDKKAL--RDNRIE 92
            :|..||.......|::.:.|.:....|..:::....:  ||.:.....|.:..:..|  ...|..
 Worm    14 IHISSQFFLESPSNLSTIAGESITFRCSAEKSPEPIVYSQWKSNTGSLLGYHQEGILPGHQGRFS 78

Human    93 LVRASWHELSISVSDVSLSDEGQYTCSLF---TMPVKTSKAYLTVLGVPEKPQISGFSS------ 148
            .::.:..||.:.::.|:|.|:|:|.|.:.   ..|:: :|::|.:: ||  ||:..||:      
 Worm    79 YIKQNAEELHLKITHVNLDDDGEYECQMLHPEEGPIR-AKSFLNII-VP--PQLVYFSNYQPNSI 139

Human   149 -PVMEGDLMQLTCKTSGSKPAADIRWFKNDKEI-KDVKYLKEEDANRKTFTVSSTLDFRVDRSDD 211
             .|.|...:.:||.....||..::.|:.:.|.: :|||.......| |||||.::|..:.||:|.
 Worm   140 IAVKENTPLNITCVVPNVKPEPEVLWYMDGKVMSRDVKQASTPHLN-KTFTVYTSLVVQSDRNDH 203

Human   212 GVAVICRV--DHESLNATPQVAMQVLEIHYTPSVKIIPSTPFPQEGQPLILTCESKGKPLPEPVL 274
            |..:.|..  ....:..|....:.||.....|:|:|:.:....:.|..:.:.|...|...|..|.
 Worm   204 GKVITCEAFQKETDIRITTNTTLDVLFPPSDPTVEILRNPSALRSGDNVTIACSVTGGNPPPDVF 268

Human   275 WTKDGGELPDPDRMVVSGRELNILF---LNKTDN-GTYRCEATNT-------------------- 315
            |..:...|.....:....:|:..::   .::.|| ..|.|.|.|:                    
 Worm   269 WYHENKRLQSHSTLDTRSKEIKNIYSFIASQNDNMAEYECRANNSRTGNPKRKAMKLEVNYPPAS 333

Human   316 ---IGQSSAEYVLIVHDVPNTLLP-------TTIIPSLTTATVTTTVAITTSPTTSATTSSIRDP 370
               .|:|:..|.... ::....||       |.||...:..|.|....:..:...|::..|:.. 
 Worm   334 VELFGESNIRYGSSA-NIQCKSLPSNPASQITWIINGRSVPTPTQREFVVENGIVSSSNVSVHS- 396

Human   371 NALA----------------GQNGPDHALIGGIVAVVVFVTLCSIFLLGRYLARHKGTYLTNEAK 419
            |.|:                |.:...|.:                    :.:|..|...:|    
 Worm   397 NELSVEAHQINVECMATNPEGSSAKQHVI--------------------KIIAPPKAPIIT---- 437

Human   420 GAEDAPDADTAIIN----AEGSQVNAE 442
            |.||....:..|:|    |:|....||
 Worm   438 GLEDRKFFEGDIVNVTCEAQGGNPLAE 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CADM2XP_016861551.1 None
syg-2NP_001309674.1 IG_like 25..105 CDD:214653 15/79 (19%)
Ig 33..122 CDD:299845 18/89 (20%)
Ig 147..228 CDD:299845 22/81 (27%)
IGc2 248..313 CDD:197706 13/64 (20%)
Ig 450..537 CDD:299845 5/15 (33%)
Ig 559..632 CDD:299845
I-set 657..738 CDD:254352
Ig 665..738 CDD:299845
IG_like 748..828 CDD:214653
IGc2 756..817 CDD:197706
Ig 845..922 CDD:299845
FN3 934..1023 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 40 1.000 Domainoid score I9396
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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