DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tspear and clos

DIOPT Version :9

Sequence 1:NP_001274003.1 Gene:Tspear / 252974 MGIID:2671932 Length:670 Species:Mus musculus
Sequence 2:NP_001097246.3 Gene:clos / 5740204 FlyBaseID:FBgn0261016 Length:1836 Species:Drosophila melanogaster


Alignment Length:455 Identity:100/455 - (21%)
Similarity:170/455 - (37%) Gaps:159/455 - (34%)


- Green bases have known domain annotations that are detailed below.


Mouse   261 NYP---YEADMKVTLGSRPPCTKA--EGAQFWFDAAQKGLYLCAGSEWVSVLAAKTKLDY----- 315
            :||   ..:|.:..|..|......  :.|.|.||          |.|.|:.:.....||.     
  Fly    28 SYPTHFLNSDQESMLHKRATAVPQFFDQASFSFD----------GLERVASVPVSFPLDICILQL 82

Mouse   316 --VEEHQSLHTNS---------------------------ETLGIEVFSIPGVGLFAAAAN---- 347
              |:...:||.|:                           :.:.::..:..|.|..|.:.|    
  Fly    83 PTVKYATALHKNAAGVRHFAVYTWRPAEQDYQLLVELETPKAVALDCLAFAGRGYVAVSYNLTEP 147

Mouse   348 -RKAR--SAIYKWTDGKFVSYQ-NIATHQAQSWRHFTIGKKIFLAVANFGPNERGQEFSVI---- 404
             .:||  |.||:      :|.: .|.|.|..|..|.   :.::|.:::       ||.:::    
  Fly   148 VSQAREGSPIYE------ISPETGIRTVQYFSGTHL---RGMYLRISS-------QELTLLHAFE 196

Mouse   405 -------YKWSPRKLKFTLYQRI-ATH--SARDWEAFEVDGEHFLVVANHREGDNHN-IDSMVYR 458
                   :||..:.     :||: |.|  .||..|||.:|...::.|||:.:.:... ..|.::|
  Fly   197 SNAQCPYFKWMGKS-----FQRLGAIHCSKARRMEAFGIDYTDYVAVANYADAEGRTATHSEIFR 256

Mouse   459 WNPSSQLFEANQSIATSGAYDWEFFT-----VGPYSFLVVANTFNGTSTQV---HSHLYIWLVGA 515
            |:..||.|:..|.:.::||.|.::|:     |....||::.||..||..:|   .:.:|::..|.
  Fly   257 WDAKSQRFQLFQRLRSNGAVDVKYFSLPVNEVSRRHFLILGNTIGGTGAEVGDADTVIYVFEKGQ 321

Mouse   516 FQLFQSFLTFGAAD--WEVFH-IGERIFLAVANSHSYDVQMQAQNDSYVLSSVIYELNITAQTFV 577
            |..:|. |:|.|.:  ..|.| |.|:..|.|| .:..||:             ||.||       
  Fly   322 FVPYQR-LSFYALERVLPVQHSISEKFLLLVA-CNKQDVK-------------IYNLN------- 364

Mouse   578 KFQDIPTCSALDWEF---------------------FSVGEDHFLVVAN-SFDGNTFSVNSIIYR 620
                       ||.|                     :..|:..:||:|| :...|..::...:|:
  Fly   365 -----------DWRFEESKVQFTEGALSRGVARMRSYEEGDQSYLVIANENMAANETNIFQPLYK 418

Mouse   621  620
              Fly   419  418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TspearNP_001274003.1 LamG <84..223 CDD:304605
EAR 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 314..359 14/85 (16%)
EAR 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 361..409 11/59 (19%)
EPTP 361..408 CDD:281697 10/58 (17%)
EAR 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 413..461 16/51 (31%)
EPTP 413..460 CDD:281697 15/50 (30%)
EAR 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 465..513 15/55 (27%)
EPTP 466..511 CDD:281697 15/52 (29%)
EAR 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 515..571 17/58 (29%)
EPTP 516..>546 CDD:281697 12/32 (38%)
EAR 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 575..623 10/68 (15%)
EPTP 576..621 CDD:281697 10/67 (15%)
EAR 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 626..669
EPTP 626..666 CDD:281697
closNP_001097246.3 EPTP 263..315 CDD:281697 14/51 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849230
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto94148
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15261
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.940

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