DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bmp4 and scw

DIOPT Version :10

Sequence 1:XP_063130065.1 Gene:Bmp4 / 25296 RGDID:2213 Length:455 Species:Rattus norvegicus
Sequence 2:NP_524863.3 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster


Alignment Length:398 Identity:99/398 - (24%)
Similarity:163/398 - (40%) Gaps:109/398 - (27%)


- Green bases have known domain annotations that are detailed below.


  Rat   115 RRRPQPSKSAVIPDYMRDLYRLQSGEEEEEE---QSQGTGLE-------YPERPASRANTVRSFH 169
            ||:.:|:.......::.::|...|.::|.:|   |.....|:       ...:..:..|::.:|.
  Fly    53 RRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNEDRQEIASCNSILTFS 117

  Rat   170 HE---EHLENIPGTSESSAFRFFFNLSSIPENEVISSAELRLFREQ--VDQGPDWEQGFHRINIY 229
            ..   |.|:|      .......||.:.:|.:..:..|.||::::.  ||:..::     .:::|
  Fly   118 SRLKPEQLDN------ELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANF-----TVSVY 171

  Rat   230 EVMKPPAEMVPGHLITRLLDTR-------LVHHNVTR----WETFDVSPAVLRWTREKQPNYGLA 283
                            |.||.|       |...|.|.    |..|:::..:..|           
  Fly   172 ----------------RKLDNRQDFSYRILGSVNTTSSQRGWLEFNLTDTLRYW----------- 209

  Rat   284 IEVTHLHQTRTHQGQHVRISRS------------LPQGSGNWAQLRPLLV--------------- 321
                 ||.....:...:|||..            .||.|.  ..|.|.:|               
  Fly   210 -----LHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASR--TSLEPFIVGYFNGPELLVKIQKL 267

  Rat   322 TFGHDGRGHTLTRRRA----KRSPKHHPQRSRKKNKNCRRHSLYVDFSDVGWNDWIVAPPGYQAF 382
            .|..|     |.:|||    ...|...|....:..::|.|.:..|||.::..::|::||..::|:
  Fly   268 RFKRD-----LEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAY 327

  Rat   383 YCHGDCPFPLADHLNSTNHAIVQTLVNSVNSSIPKACCVPTELSAISML-YLDEYDKVVLKNYQE 446
            :|.|.|.|||...:|:|||||||||::.....:||.|||||.|.||::| ||:| |.:.|..||:
  Fly   328 FCGGGCNFPLGTKMNATNHAIVQTLMHLKQPHLPKPCCVPTVLGAITILRYLNE-DIIDLTKYQK 391

  Rat   447 MVVEGCGC 454
            .|.:.|||
  Fly   392 AVAKECGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Bmp4XP_063130065.1 None
scwNP_524863.3 TGFb_propeptide 39..254 CDD:480997 44/245 (18%)
TGF_beta_BMP5_like 299..400 CDD:381639 47/102 (46%)

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