DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abcd3 and Pmp70

DIOPT Version :9

Sequence 1:NP_036936.1 Gene:Abcd3 / 25270 RGDID:2007 Length:659 Species:Rattus norvegicus
Sequence 2:NP_001259732.1 Gene:Pmp70 / 32992 FlyBaseID:FBgn0031069 Length:665 Species:Drosophila melanogaster


Alignment Length:670 Identity:384/670 - (57%)
Similarity:487/670 - (72%) Gaps:21/670 - (3%)


- Green bases have known domain annotations that are detailed below.


  Rat     3 AFSKYLTARNSS----LAGAAFLLFCLLHKRRRALGLHGKKSGKPPLQNN------EKEGKKE-R 56
            |.||  .|.|.|    :||....|:.:      |.|....|..||..::.      ||:.||. :
  Fly     4 ALSK--LANNQSAIVGVAGMTAALWII------AYGKMSNKKRKPGYEDKIQYTIAEKKDKKAGK 60

  Rat    57 AVVDKVFLSRLSQILKIMVPRTFCKETGYLILIAVMLVSRTYCDVWMIQNGTLIESGIIGRSSKD 121
            |.|:.||..:|.|:|.|::|..:..|||.|.|:|..|:.|:..|:|||||.|::||.||..:...
  Fly    61 AHVNSVFFKQLRQLLPILIPGFWSVETGLLFLVAAALIGRSVSDIWMIQNATVVESTIIHMNRTK 125

  Rat   122 FKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEYLQAFTYYKMGNLDNRIANPD 186
            ||..|..::.|:|.||:|.|.||:.|.||||.||..||.:||.:||..:|||||.||||||||.|
  Fly   126 FKTALLKYLTALPAISVVTNVLKWSLGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIANAD 190

  Rat   187 QLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLLVSGLFLTRLRRPI 251
            ||||.|::|||.|..|||||:|||.|||.:|:::||..:|.:.|:.:|.|||.:|:||||||||.
  Fly   191 QLLTTDIDKFCESATDLYSNISKPVLDIFIYVYRLTVNLGGKTPSILMLYLLFAGVFLTRLRRPT 255

  Rat   252 GKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLHNFIFFRFSMGFI 316
            |::|:.|||.|||:|:|||||||||||:|||.||.|||.|:.:.:.||..||..|:.||.|||.|
  Fly   256 GRLTVEEQKLEGEFRYVNSRLITNSEEVAFYQGNVREKLTLLASYSKLRSHLRKFLEFRVSMGII 320

  Rat   317 DSIIAKYIATVVGYLVVSRPFLDLAHPRHLHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREM 381
            |:||.||.|::||:..||.||....||........:.|:.||..||||:::::|:||:|||||||
  Fly   321 DNIIGKYFASIVGFYAVSIPFFSENHPLLSGENSGQRLQAYYTYGRMLVKLAEAIGRLVLAGREM 385

  Rat   382 TRLAGFTARITELMQVLKDLNHGKYERTMVSQQD--KGIEGAQASPLIPGAGEIINADNIIKFDH 444
            :||||||||:|||::||.|||.|.||||||:..:  :...|:.:|...|..|.:...||||:|:.
  Fly   386 SRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNLAQNAVGSASSNFGPNKGIMCFEDNIIRFEK 450

  Rat   445 VPLATPNGDILIQDLSFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGHLTKPERGKLFYVP 509
            |||.|||||:|:|:|||||:||.|||:|||||||||||||:||||||.:||.:|||.||||||||
  Fly   451 VPLVTPNGDVLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWGGKVTKPSRGKLFYVP 515

  Rat   510 QRPYMTLGTLRDQVIYPDGKEDQKKKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGG 574
            |||||||||||||:|||..::|.::.|.||:.|..|||.|||.::.:||.|.||::||:||||||
  Fly   516 QRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLDIVQLTYLEQRENGLDSIEDWIDVLSGG 580

  Rat   575 EKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
            ||||:|||||||||||||||||||||||||||..:||:||:|||||||||||||||.||:|||..
  Fly   581 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGITLFTVSHRKSLWAHHDYYLQF 645

  Rat   640 DGRGNYEFKKITEDTVEFGS 659
            ||||:|||..|.:|...|||
  Fly   646 DGRGSYEFATIDQDKDHFGS 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abcd3NP_036936.1 3a01203 1..647 CDD:273360 377/656 (57%)
Interaction with PEX19. /evidence=ECO:0000250 2..199 92/206 (45%)
Targeting to peroxisomes. /evidence=ECO:0000250 2..124 47/131 (36%)
ABC_membrane_2 59..338 CDD:284003 154/278 (55%)
ABCD_peroxisomal_ALDP 440..645 CDD:213190 153/204 (75%)
Pmp70NP_001259732.1 3a01203 3..653 CDD:273360 377/656 (57%)
ABC_membrane_2 63..342 CDD:284003 154/278 (55%)
ABCD_peroxisomal_ALDP 446..651 CDD:213190 153/204 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352267
Domainoid 1 1.000 313 1.000 Domainoid score I1260
eggNOG 1 0.900 - - E1_COG4178
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2140
Inparanoid 1 1.050 757 1.000 Inparanoid score I528
OMA 1 1.010 - - QHG53776
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 1 1.000 - - oto95951
orthoMCL 1 0.900 - - OOG6_100236
Panther 1 1.100 - - LDO PTHR11384
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X313
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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