DRSC/TRiP Functional Genomics Resources

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Protein Alignment X11L and Synj2bp

DIOPT Version :9

Sequence 1:NP_001285376.1 Gene:X11L / 252671 FlyBaseID:FBgn0026313 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_072121.2 Gene:Synj2bp / 64531 RGDID:69400 Length:145 Species:Rattus norvegicus


Alignment Length:117 Identity:30/117 - (25%)
Similarity:49/117 - (41%) Gaps:23/117 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1016 VVIANLMSSGAAARCGQLNIGDQLIAINGMSLVGLPLSTCQSYIRNAKNQTAVKFTVVPCPPVVE 1080
            :.::.:...|||||.|:|..||:::::||..|..|.........|||....:::           
  Rat    42 IYVSRIKEDGAAARDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR----------- 95

  Fly  1081 VKILRPKALFQLGFSVQNGVICSLLRGGIAERGGVRVGHRIIEINNQSVVAV 1132
                     .|....||||.|   :..|..|..||.|...::.:...::|||
  Rat    96 ---------VQHRLPVQNGPI---VHRGDGEPSGVPVAVVLLPVFALTLVAV 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
X11LNP_001285376.1 PTB_X11 775..954 CDD:269919
PDZ_signaling 988..1065 CDD:238492 16/48 (33%)
PDZ_signaling 1092..1151 CDD:238492 13/41 (32%)
Synj2bpNP_072121.2 PDZ_signaling 13..97 CDD:238492 16/74 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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