DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment X11L and Pdzd3

DIOPT Version :9

Sequence 1:NP_001285376.1 Gene:X11L / 252671 FlyBaseID:FBgn0026313 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_573489.2 Gene:Pdzd3 / 170761 MGIID:2429554 Length:498 Species:Mus musculus


Alignment Length:494 Identity:104/494 - (21%)
Similarity:164/494 - (33%) Gaps:170/494 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   754 LKDSANSDKKAKSRNKEGLLEPKV-LIEGV-------LFRARYLGSTQLVCEGQPTKSTRMMQ-- 808
            |:|:|....|.|...:.|:..|.: |.|..       |.|.|:   ..|..|.:.|....:.|  
Mouse     7 LRDTALLTLKFKFNPRLGIDNPVLSLAEDQDQSDPWNLHRPRF---CLLSKEEEKTFGFHLQQHL 68

  Fly   809 --AEEAVSRIKALAPEGESQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVL 871
              |:..|.|:.. ....:.|...|.|..::....:|.:.       |||: .:.||...|..|:|
Mouse    69 GKADHVVCRVDP-GTSAQRQGLREGDRILAVNNNIVAHE-------DHAV-VVRYIRASGPRVLL 124

  Fly   872 MARRRFV---------PNSVVDPSITSPLGDVPTPGIGEEESPPKEPLSKHNRTPKMICHVFESD 927
            ....:.|         .::.:.|  |.|.|..|                       .:|||.: |
Mouse   125 TVLAQHVHDVARVLQGSDAFLCP--TLPSGVRP-----------------------RLCHVVK-D 163

  Fly   928 EAQF-------------IAQSIGQAFQVAYM----EFLKANGIENESLAKEMDYQEVLNSQEIFG 975
            |..|             :..|.|.|.:.|.:    ..|:.||...|.|.    |.::.......|
Mouse   164 EGGFGFSVTHGSRGPFWLVLSAGGAAERAGVPPGARLLEVNGASVEKLT----YNQLNRKLWQSG 224

  Fly   976 DELEIF-AKKELQKE-------VVVPKAKG-------EILGVVIVESGWGSMLPTVVIANLMSSG 1025
            |::.:. |..|::::       :..|.|:|       ..|.:.....|:|.:|..       ..|
Mouse   225 DQVTLLVAGLEVEEQCHQLGMPLAAPLAEGWALPAKPRCLNIEKGPEGFGFLLRE-------EKG 282

  Fly  1026 AAARCGQ---------------LNIGDQLIAINGMSLVGL----------PLSTCQSYIRNAKNQ 1065
            ...|.||               :..||:|:|:.|.|:.||          ...:|.|.|  ..:.
Mouse   283 LDGRLGQFLWDVDPGLPADKAGMKAGDRLVAVAGESVDGLGHEETVSRIRAQGSCVSLI--VVDP 345

  Fly  1066 TAVKF--------------TVVPCPPVVEVKIL------RPKAL-----------------FQLG 1093
            .|.:|              |.:..||:.|.|.|      .|..|                 |:| 
Mouse   346 EADRFFSMVRLSPLLFLENTEIAAPPLAETKDLPVEDTVEPSGLAGSCQCFLYPGPGGGYGFRL- 409

  Fly  1094 FSVQNG---VICSLLRGGIAERGGVRVGHRIIEINNQSV 1129
            ..|.:|   .|..:..||.|.|.|::||..::|:|...|
Mouse   410 CCVASGPCLFISQVTPGGSAARAGLQVGDTVLEVNGYPV 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
X11LNP_001285376.1 PTB_X11 775..954 CDD:269919 44/216 (20%)
PDZ_signaling 988..1065 CDD:238492 22/115 (19%)
PDZ_signaling 1092..1151 CDD:238492 14/41 (34%)
Pdzd3NP_573489.2 PDZ_signaling 47..127 CDD:238492 20/91 (22%)
PDZ_signaling 155..232 CDD:238492 19/104 (18%)
PDZ 260..345 CDD:214570 19/93 (20%)
PDZ_signaling 407..471 CDD:238492 15/43 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.