DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment X11L and Lnx2

DIOPT Version :9

Sequence 1:NP_001285376.1 Gene:X11L / 252671 FlyBaseID:FBgn0026313 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_542985.4 Gene:Lnx2 / 140887 MGIID:2155959 Length:687 Species:Mus musculus


Alignment Length:585 Identity:112/585 - (19%)
Similarity:194/585 - (33%) Gaps:169/585 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   684 LNGTSDNNNPNPMNNSKPQTYSTATIRQGIGTSLTPNSPDICQIVGTTDISISSPEKLQFTKSPT 748
            :.|.:.:...:|.....|:|..:.|:..  ..:|||.|..:                  :|:.|.
Mouse   160 IEGETGSTVIDPPGTLPPETDCSGTVPG--ERNLTPASLPV------------------WTEEPG 204

  Fly   749 GSIKSLKDSANSDKKAKSRNKEGLLEPKVLIEGVLFRAR------YLGSTQLVCEGQPTKSTRMM 807
            ....:.::||.:|         .:.:|..|.||.:....      |:.....:..|..|....::
Mouse   205 LDNPAFEESAAAD---------SVQQPLSLPEGEITTIEIHRSNPYIQLGISIVGGNETPLINIV 260

  Fly   808 QAEEAVSRIKALAPEGESQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLM 872
            ..|  |.|...:|.:|.        |....:.:.|.|.|:..:..:||...:|.......|.|| 
Mouse   261 IQE--VYRDGVIARDGR--------LLAGDQILQVNNYDISNVSHNHARAVLSQPCSTLQLTVL- 314

  Fly   873 ARRRF--VPNSVVDPSI---------------TSPLG---------------DVPTPGIGEEESP 905
            ..|||  ..||..|.|.               |..||               |:...|:..::. 
Mouse   315 RERRFGSRANSHADGSAPRDEVFQVLLHKRDSTEQLGIKLVRRTDEPGVFILDLLEGGLAAQDG- 378

  Fly   906 PKEPLSKHNRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIE-NESLAKEMDYQEVLN 969
               .|:.::|...:..|..:....:..||            .::|:|.. |.::|:....|....
Mouse   379 ---RLNSNDRVLAINGHDLKHGTPELAAQ------------IIQASGERVNLTIARPGKPQPSNG 428

  Fly   970 SQEIFGDELEIFAK----------KEL-------QKEVVVPKAKGEILGVVIVESGWGSM---LP 1014
            |:|.........|:          |:|       :|.:.|.|...|.||:. |..|.||.   ||
Mouse   429 SREAGAHSSSNHAQPPSHSRPGSHKDLTRCVTCQEKHITVKKEPHESLGMT-VAGGRGSKSGELP 492

  Fly  1015 TVVIANLMSSGAAARCGQLNIGDQLIAINGMSLVGLPLSTCQSYIRNAKNQTAVKFTVVPCPPVV 1079
             :.:.::...|..||.|::..||.|:.|||:.|..|..|...:.::.:....||....:......
Mouse   493 -IFVTSVPPHGCLARDGRIKRGDVLLNINGIDLTNLSHSEAVAMLKASAASPAVILKALEVQIAE 556

  Fly  1080 EVK---------------------------------------ILRPKALFQLGFSVQNG------ 1099
            |..                                       :||...|...|||:..|      
Mouse   557 EAAQATEEQPSAFSENEYDASWSPSWVMWLGLPSALHSCHDIVLRRSYLGSWGFSIVGGYEENHT 621

  Fly  1100 ----VICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHDTIVKLLSSSVGEILMKTM--PTSM 1157
                .|.:::.|..|...| ::.|..|:.:|..|.|.:.|..:|.:|.....::.:..:  |.|:
Mouse   622 NQPFFIKTIVLGTPAYYDGRLKCGDMIVAVNGLSTVGMSHSALVPMLKEQRNKVTLTVICWPGSL 686

  Fly  1158  1157
            Mouse   687  686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
X11LNP_001285376.1 PTB_X11 775..954 CDD:269919 41/216 (19%)
PDZ_signaling 988..1065 CDD:238492 25/79 (32%)
PDZ_signaling 1092..1151 CDD:238492 16/69 (23%)
Lnx2NP_542985.4 mRING-HC-C3HC3D_LNX2 46..90 CDD:319694
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..175 2/14 (14%)
NPXY motif 207..210 0/2 (0%)
PDZ 229..315 CDD:214570 18/96 (19%)
PDZ_signaling 336..418 CDD:238492 13/97 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..454 5/36 (14%)
PDZ_signaling 463..539 CDD:238492 25/77 (32%)
PDZ_signaling 596..680 CDD:238492 19/83 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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