DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gata2 and grn

DIOPT Version :9

Sequence 1:NP_254277.1 Gene:Gata2 / 25159 RGDID:2664 Length:480 Species:Rattus norvegicus
Sequence 2:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster


Alignment Length:629 Identity:202/629 - (32%)
Similarity:245/629 - (38%) Gaps:258/629 - (41%)


- Green bases have known domain annotations that are detailed below.


  Rat    54 SQGNPYYA---NPAHARARVSYSPAHARL----TGGQMCRPHLLHSPGLPWLDGGKAALSAAAAH 111
            |..:.:||   |..|.|...||....:|:    ...|:|||| .|:|..|||.....:.:.|:| 
  Fly    83 SDMSAFYALESNGHHRRYYPSYHQHTSRMPSTHASPQVCRPH-FHTPLSPWLTSEHKSFAPASA- 145

  Rat   112 HHSPWTVSPFSKTPLHPSAAGAPGGPLSVYPGAAGGSGGGSGSSVASLTPTAAHSGSHLFGFPPT 176
                |::..|: .|..|......            |..|.|..:.|        :|.|.|.||||
  Fly   146 ----WSMGQFA-CPQEPQVEHKL------------GQMGQSHQTTA--------AGQHSFPFPPT 185

  Rat   177 PPKEVSPDPSTTG--------------------------AASPASPSAGGSVARGEDKDGVKY-- 213
            |||:.:||...||                          .|....||.....|.|....|..:  
  Fly   186 PPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTS 250

  Rat   214 -------------------------------------------------------QVSLSESMK- 222
                                                                   ..|||.::. 
  Fly   251 TPKQREGTASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSAAAASLSAAVAA 315

  Rat   223 -----------------MEGGSPLRPGLAPMGTQPATHHPIPTYPSYVPASAHEY---------- 260
                             ..|||    |....|...:..:...:|.||..|:||..          
  Fly   316 SAATSSNGLFDGTAQAYSSGGS----GGGGGGGSGSGGYDTSSYASYHHAAAHHQAAAVAAANMF 376

  Rat   261 -----------------------------------GSGLFHPGGFLGGPA--SSFTPKQ------ 282
                                               .|||...||.:||.|  .|.:...      
  Fly   377 QSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGMGSMSGNSGGAGSL 441

  Rat   283 --------------------RSKARSCSEGRECVNCGATATPLWRRDGTGHYLCNACGLYHKMNG 327
                                |:|.|:.:|||||||||||:||||||||||||||||||||:||||
  Fly   442 SGHSGAGSNAGSNCLDVKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNG 506

  Rat   328 QNRPLIKPKRRL------SAARRAGTCCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNVNRPL 386
            ||||||||||||      |||:||||.||||:|||||||||||:|:|||||||||||||||||||
  Fly   507 QNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPL 571

  Rat   387 TMKKEGIQTRNRKMSSKSKKSK-KGAECFEELSKCMQEKSSPFSAAALAGHMAPVGHLPP----- 445
            |||||||||||||:||||||.| .|..|.                 .:.||:. :|...|     
  Fly   572 TMKKEGIQTRNRKLSSKSKKKKGLGGGCL-----------------PIGGHLG-MGDFKPLDPSK 618

  Rat   446 -----FSHS----GHILPTPTPIHPSSSLSFGHPHPSSMVTAMG 480
                 ||.|    ||:   .:.:||:.:    |.|.|.....||
  Fly   619 GFGGGFSASMAQHGHL---SSGLHPAHA----HMHGSWYTGGMG 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gata2NP_254277.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..208 19/67 (28%)
ZnF_GATA 294..344 CDD:238123 47/55 (85%)
ZnF_GATA 349..398 CDD:238123 45/48 (94%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..480 5/22 (23%)
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 44/46 (96%)
ZnF_GATA 473..517 CDD:238123 41/43 (95%)
ZnF_GATA 529..578 CDD:214648 44/48 (92%)
ZnF_GATA 533..583 CDD:238123 45/49 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8228
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 285 1.000 Inparanoid score I2772
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1240204at2759
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm46371
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X385
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.930

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