DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myo5b and didum

DIOPT Version :9

Sequence 1:XP_008770307.1 Gene:Myo5b / 25132 RGDID:621347 Length:1854 Species:Rattus norvegicus
Sequence 2:NP_724569.1 Gene:didum / 35680 FlyBaseID:FBgn0261397 Length:1800 Species:Drosophila melanogaster


Alignment Length:1931 Identity:746/1931 - (38%)
Similarity:1122/1931 - (58%) Gaps:214/1931 - (11%)


- Green bases have known domain annotations that are detailed below.


  Rat     6 SNSSMLHCKTWQYTRVWIPDPDEVWRSAELTKDYKDGDESLQLRLEDDTILDYPIDVQNNQVPFL 70
            |:..||:.   |..::|:|..|.||.||.|.:.|:.|...|::..:...:.:..:....:.:|.|
  Fly     2 SSEEMLYA---QGAKIWVPHADLVWESATLEESYRKGAGFLKICTDSGKLKEVKLKADGSDLPPL 63

  Rat    71 RNPDILVGENDLTALSHLHEPAVLHNLKVRFLESNHIYTYCGIVLVAINPYEQLPIYGQDVIYAY 135
            |||.||||:||||.||:||||.|||||:|||.|...|||||||:|||||||.::|:||..:|.||
  Fly    64 RNPAILVGQNDLTTLSYLHEPGVLHNLRVRFCERQIIYTYCGIILVAINPYAEMPLYGPSIIRAY 128

  Rat   136 SGQNMGDMDPHIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYAMRYFATVGGSASDTNI 200
            .|..|||::|||||:|||||.::.|:..|.||||||||||||||||||||||||.||||.|:|.:
  Fly   129 RGHAMGDLEPHIFALAEEAYTKLERENCNLSIIVSGESGAGKTVSAKYAMRYFAAVGGSESETQV 193

  Rat   201 EEKVLASSPIMEAIGNAKTTRNDNSSRFGKYIEIGFDKKYHII---GANMRTYLLEKSRVVFQAD 262
            |.|||||||||||.||||||||||||||||:.::.|..:..::   ||.|.||||||||||:||.
  Fly   194 ERKVLASSPIMEAFGNAKTTRNDNSSRFGKFTKLLFRNQMGVMFLQGATMHTYLLEKSRVVYQAQ 258

  Rat   263 DERNYHIFYQLCAAASLPEFKELALTCAEDFFYTAHGGNTTIEGVDDAEDFEKTRQALTLLGVRE 327
            .|||||||||||||.|  ::.||.|...:.|.:...||...||.|.|||.|.:|.||:|:||...
  Fly   259 GERNYHIFYQLCAARS--KYPELVLDHQDKFQFLNMGGAPEIERVSDAEQFNETVQAMTVLGFSI 321

  Rat   328 SHQISIFKIIASILHLGSVEI-------QAERDGDSCSISPQDEHLSNFCRLLGIEHSQMEHWLC 385
            .....|.||:|.|||||::::       ..|.|.|||.|...|.||.....||.:....:..||.
  Fly   322 QQIADIVKILAGILHLGNIQVSKKFNEGSEEEDSDSCDIFHNDIHLQITADLLRVSADDLRRWLL 386

  Rat   386 HRKLVTTSETYVKTMSLQQVVNARNALAKHIYAQLFSWIVEHINKALQTSLKQHSFIGVLDIYGF 450
            .||:.:.:|..:...|::....||:||||||||:||.:||..:||:|....||.|||||||||||
  Fly   387 MRKIESVNEYVLIPNSIEAAQAARDALAKHIYAKLFQYIVGVLNKSLNNGSKQCSFIGVLDIYGF 451

  Rat   451 ETFEINSFEQFCINYANEKLQQQFNSHVFKLEQEEYMKEQIPWTLIDFYDNQPCIDLIEAKLGIL 515
            ||||:||||||||||||||||||||.||||||||||:||.|.||:||||||||||||||::||:|
  Fly   452 ETFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGITWTMIDFYDNQPCIDLIESRLGVL 516

  Rat   516 DLLDEECKVPKGTDQNWAQKLYERHSNSQHFQKPRMSNTAFIVIHFADKVEYLSDGFLEKNRDTV 580
            |||||||::|||:|::||.||..:.:...||:|||...|:|.:.||:|.|||..:||||||||||
  Fly   517 DLLDEECRMPKGSDESWAGKLIGKCNKFPHFEKPRFGTTSFFIKHFSDTVEYDVNGFLEKNRDTV 581

  Rat   581 YEEQINILKASKFPLVADLFRDDKDSVPATNTAKSRS-SSKINVRSSRPLM-------KAPNKEH 637
            .:|...:|..|...|...:...::......::|||.: ..::.:.:.|...       ..|:|:|
  Fly   582 SKELTQVLSESNMSLAKQVMTLEEIDTLCVDSAKSSTLGGRVVISAGRKQQGNDTRRRVVPSKQH 646

  Rat   638 KKSVGYQFRTSLNLLMETLNATTPHYVRCIKPNDEKLPFHFDPKRAVQQLRACGVLETIRISAAG 702
            :|:||.||:.||..|:.||:||||||||||||||:|:.|.::..:.:|||||||||||:||||||
  Fly   647 RKTVGSQFQESLASLISTLHATTPHYVRCIKPNDDKVAFKWETAKIIQQLRACGVLETVRISAAG 711

  Rat   703 YPSRWTYHDFFNRYRVLMKKRELANTTDKKNICKSVLESLIKDPDKFQFGRTKIFFRAGQVAYLE 767
            :||||.|.||:.||::|:.:.:| :..|.|..|::::...|:|.||::||.|:|||||||||:||
  Fly   712 FPSRWLYPDFYMRYQLLVYRSKL-DKNDMKLSCRNIVMKWIQDEDKYRFGNTQIFFRAGQVAFLE 775

  Rat   768 KLRADKFREATIMIQKTVRGWLQRVKYRRLRAATLTLQRFCRGYLARRLTEHLRRTRAAIVFQKQ 832
            ::||:..::...::|..||.::.|.::.|::.....:|:..||||||..|:.:|..||.::..|.
  Fly   776 QVRANLRKKYITIVQSVVRRFVYRRQFLRIQKVINGIQKHARGYLARERTQKMREARAGLILSKY 840

  Rat   833 YRMLKARRAYCRVRRAAVIIQSYTRAMCVRRSYRQVLTEHKATIIQKYARGWMARRHFQRQRDAA 897
            .|....||.|.|:|.:...||:|.|.|..|..:..:...::|..||::.||.:|||.:|::|...
  Fly   841 ARGWLCRRRYLRLRHSISGIQTYARGMLARNKFHAMRDHYRAVQIQRFVRGALARRAYQKRRRNI 905

  Rat   898 IVIQCAFRRLKARQALKALKIEARSAEHLKRLNVGMENKVVQLQRKIDDQNKEFKTLSEQLSAVT 962
            |:.|.|.||..||:..|.:|.||::..|::...:|:|||::.:|::||:.|::...|..:.|.: 
  Fly   906 IICQAAIRRFLARRKFKRMKAEAKTISHMENKYMGLENKIISMQQRIDELNRDNSNLKHKTSEI- 969

  Rat   963 STHAMEVEKLKKELARYQQN-----QEADPSLQ-LQEEVQSLRTEL-----QKAHSERRVL--ED 1014
            |...|::| |||.|....:|     |:.|..:: |.:::::.|.|.     :..|::...:  :.
  Fly   970 SVLKMKLE-LKKTLEAEFKNVKAACQDKDKLIEALNKQLEAERDEKMQLLEENGHAQEEWISQKQ 1033

  Rat  1015 THNRENGELRKRVADLEHENALLKDEKEHLNNQILRQSK-AESSQSSVEENLLIKKELEEERSRY 1078
            |..:||.|||:::                  ::|:..:| ||.:|.:.|:.:|.:.:..|....|
  Fly  1034 TWRQENEELRRQI------------------DEIIDMAKNAEVNQRNQEDRMLAEIDNRELNEAY 1080

  Rat  1079 QNLVKEYSQLEQRYENLRDE--QQTPG----HRKNPSNQSSL-ESDSNYPSI-STSEIGDTEDAL 1135
            |..:|:...:|.....|::|  :.|.|    |.:..||.||. |.|..|.|. :|.:|....|.|
  Fly  1081 QRAIKDKEVIENENFMLKEELSRLTAGSFSLHARKASNASSQNEDDVGYASAKNTLDINRPPDLL 1145

  Rat  1136 QQVEEIGIEKAAMDMT-VFLKLQKRVRELEQERKKLQVQLEKEQQDSKKVQVEQQNNGLDVDQDA 1199
            .:      ..:..|.| :.:||:..:.|.:|:.|.||.|..|.....|..:              
  Fly  1146 SK------NYSYNDSTSLVVKLRSILEEEKQKHKVLQEQYIKLSSRHKPTE-------------- 1190

  Rat  1200 DIAYNSLKRQELESENKKLKNDLNELRKAVADQAMQDNSTHSSPDSYSLLLNQLKLAN----EEL 1260
                :|.:..|||.||:||:::.::||.::               .:.:.:|:|...:    ||:
  Fly  1191 ----DSFRVSELEVENEKLRSEYDQLRTSI---------------KHGVEINELNAQHAALQEEV 1236

  Rat  1261 EVRKEEVLILRTQIMNADQRRLSGKNMEP-NINARTSWPNSEKHVDQEDAIEAYHGVCQTNSQTE 1324
            ..|:||.:.|:..::...|   |.:::|| ::..|.:        |..:.:||:|      ||  
  Fly  1237 RRRREECIQLKAVLLQQSQ---SMRSLEPESLQMRGN--------DVNELMEAFH------SQ-- 1282

  Rat  1325 DWGYLNEDGELGLAYQGLKQVARLLEAQLQAQNLKHEEEVEHLKAQVEAMKEEMDKQQQTFCQTL 1389
                              |.:.|.||::|:|...:|..::..:..::|.:..|.|:.|:...:: 
  Fly  1283 ------------------KLINRQLESELKAITEEHNSKLVEMTQEIERLNNEKDELQKVMFES- 1328

  Rat  1390 LLSPEAQVEFGVQQEISRLTNENLDFKELVEKLEKNEKKLKKQLK----IYMKKVQDLEAAQALA 1450
                           |....:.|:|      .|.:|::.|:::|:    .::...::|:.|.|..
  Fly  1329 ---------------IDEFEDSNVD------TLRQNDRYLRRELQKAVAQFLLVQEELKLANAKL 1372

  Rat  1451 QSDRR-----HHELTRQV---------------TVQRKEKDFQGMLEYHKEDEALLIRNLVTDLK 1495
            ::.|:     .|::..::               ..::|.::.||::::|..|...:::.|::.|.
  Fly  1373 KAYRQDGGQLEHKIEEEMIRNKSNGTSADVGANVTKQKSQNPQGLMKFHSSDLDKILQRLLSALT 1437

  Rat  1496 PQMLSGTVPCLPAYILYMCIRHADYTNDDLKVHSLLSSTINGIKKVLKKHNEDFEMTSFWLSNTC 1560
            |:.:.|.:|..|||:::||||:.|.||.|..|..|||..:..||| :.:.....|....||.|:.
  Fly  1438 PRTVVGLLPGFPAYLIFMCIRYTDLTNADDDVRELLSKFVIQIKK-MHRTPHPIENRVIWLVNSI 1501

  Rat  1561 RLLHCLKQYSGDEGFMTQNTAKQNEHCLKNFDLTEYRQVLSDLSIQIYQQLIKIAEGLLQPMIVS 1625
            .||:.:|||...:.::..||.|||:..||||:|.|||:|:.||.:.:||.||...:|||.|.||.
  Fly  1502 TLLNLMKQYGDVDEYVKFNTEKQNQQQLKNFNLFEYRRVILDLIVNLYQALIMQIQGLLDPKIVP 1566

  Rat  1626 AMLENESIQGLSGVRPTGYRKRSSSMVDGENSY-------CLEAIIRQMNFFHTVLCDQGLDPEI 1683
            |:|.|:.||  .|.:..|.|.|::|:  |.:|.       ..:.:|.|:..|:......|||...
  Fly  1567 AILNNDEIQ--RGRQAHGMRSRATSI--GASSSPEHGGGPAWKQLIGQLEHFYKQFQHFGLDNCY 1627

  Rat  1684 ILQVFKQLFYMINAVTLNNLLLRKDACSWSTGMQLRYNISQLEEWLRGKNLQQSGAVQTMEPLIQ 1748
            ..|:|.||.|.|.||.||.|:||.|.|.|.|||.:||||..:|:|:|.|.: .:..:..:.||.|
  Fly  1628 AEQIFHQLLYFICAVALNCLMLRGDICMWETGMIIRYNIGCIEDWVRSKKM-SNDVLTALAPLNQ 1691

  Rat  1749 AAQLLQLKKKTQEDAEAICSLCTSLSTQQIVKILNLYTPLNEFEERVTVSFI----RTIQAQLQE 1809
            .:|||| .:|:::|.:.||.|||||||.|::|::..| .|:::|..:|..|:    ..:.|:..:
  Fly  1692 VSQLLQ-SRKSEQDVQTICDLCTSLSTAQVLKVMKSY-KLDDYESEITNVFLEKLTEKLNARQMQ 1754

  Rat  1810 RSDPQQLLLDSKHMFPVLFPFNPSALTMDSIHIPACLNL-EFLNEV 1854
            :|:..:..:|.|.:.|....|..|.:.::.|.:|:.||| |||.::
  Fly  1755 KSNSDEFTIDQKFIQPFKVVFRYSDIKLEDIELPSHLNLDEFLTKI 1800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo5bXP_008770307.1 MYSc 72..770 CDD:214580 404/715 (57%)
MYSc_Myo5 91..759 CDD:276831 380/685 (55%)
IQ 871..891 CDD:197470 8/19 (42%)
DUF1690 910..1002 CDD:285231 28/97 (29%)
Rab5-bind 919..1179 CDD:286404 73/282 (26%)
RILP-like <979..1069 CDD:304877 20/103 (19%)
Uso1_p115_C 1155..1267 CDD:282695 26/115 (23%)
GBP_C <1340..1416 CDD:303769 14/75 (19%)
coiled coil 1385..1396 CDD:293879 0/10 (0%)
coiled coil 1405..1416 CDD:293879 3/10 (30%)
Myo5b_CBD 1480..1851 CDD:271261 142/382 (37%)
didumNP_724569.1 MYSc 65..778 CDD:214580 404/715 (57%)
MYSc_Myo5 84..767 CDD:276831 380/685 (55%)
IQ 900..922 CDD:197470 8/21 (38%)
GBP_C <971..1086 CDD:303769 29/133 (22%)
coiled coil 1049..1068 CDD:293879 6/18 (33%)
coiled coil 1077..1086 CDD:293879 2/8 (25%)
JAKMIP_CC3 <1190..1299 CDD:292653 35/178 (20%)
Myo5_CBD 1424..1792 CDD:271254 138/375 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 771 1.000 Domainoid score I79
eggNOG 1 0.900 - - E2759_KOG0160
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1251 1.000 Inparanoid score I161
OMA 1 1.010 - - QHG52542
OrthoDB 1 1.010 - - D311886at2759
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - otm45187
orthoMCL 1 0.900 - - OOG6_100101
Panther 1 1.100 - - LDO PTHR13140
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X244
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.880

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