DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fgfr4 and Cad96Ca

DIOPT Version :9

Sequence 1:XP_006253668.1 Gene:Fgfr4 / 25114 RGDID:2612 Length:801 Species:Rattus norvegicus
Sequence 2:NP_651349.1 Gene:Cad96Ca / 43026 FlyBaseID:FBgn0022800 Length:773 Species:Drosophila melanogaster


Alignment Length:809 Identity:234/809 - (28%)
Similarity:351/809 - (43%) Gaps:206/809 - (25%)


- Green bases have known domain annotations that are detailed below.


  Rat    10 IFQETPAFSLEASEEMEQEPCPAPISEQQE-------QVLTVALGQPVRLCCGRTERGRHWYKE- 66
            ||...|.|||...|.....|...|....:|       :.|....||...:....|: |.:..|. 
  Fly    90 IFGIEPRFSLPGGENDASPPEKIPFQIDRETGVVTLNESLAGRAGQNFLIYITVTD-GSYTAKNE 153

  Rat    67 ------GSRLASAGRVRGWRGRLEIASFLPEDAGRYLCLARGSMTVVHNLTLIMD--DSLP---S 120
                  |.|..|:    |:|.:..|::                  ||||::..:.  |.||   |
  Fly   154 VFINILGERENSS----GYRPQTSISN------------------VVHNISQFLPRFDQLPGVQS 196

  Rat   121 INNEDPKTLSSSSSGHSYLQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAAGN----PMPTIHWL 181
            |.|..|   :|...|         |..|         ||..|.  |..|..||    |.|.|..:
  Fly   197 IRNGLP---NSRPGG---------WYPP---------VPQNNI--FGPPPFGNNYPPPPPNIPGV 238

  Rat   182 KNGQAFHGENR--------IGGIRLRHQHWSLVMESVVPSDRGTYTCLVENSLGSIRYSYLLDVL 238
            :..|:  ||..        ...:|:         .|..|..|...|.:..|:  |.|        
  Fly   239 RGEQS--GEEEQPDEEVTPTTPVRI---------SSTTPKSRTKLTPITANN--STR-------- 282

  Rat   239 ERSPHRPILQAGLPANTTAVVGSNVELLCKVYSDAQPHIQWLKHIVINGSSFGADGFPYVQVLKT 303
                    :::.:||.||...|.:                   |   |.||         ..:..
  Fly   283 --------VESAIPAETTTPSGGH-------------------H---NNSS---------SPITI 308

  Rat   304 TDINSSEVEVLYLRNVSAEDAGEYTCLAGNSIGLSYQSAWL----------TVLPEAEEEDLA-- 356
            ..:.|..:.::             ..:.|..:.::...|:|          |:....|:|:||  
  Fly   309 FSLKSGTIPIV-------------VTVGGFFVAIAVLLAYLCRRRLCAISRTLKKTKEKEELAKK 360

  Rat   357 ------WTTATSEARYTDIILYVSGSLALVLLLLLAGVYHRQAIHGHHSRQPVTVQKLSRFPLA- 414
                  .:|.|.::|.:.::....|.:|.                   :.:.|..::..:..:| 
  Fly   361 SNQSQLSSTLTDDSRNSMVMQQWQGPVAF-------------------ANRYVPWERDQQMGIAT 406

  Rat   415 RQFSLESRSSGKSSLSLV---RGVRLSSSGPPLLT-GLVSLDLPLDPL--------WEFPRDRLV 467
            .|.|....:.|.||..:.   .|...|:.||..|| |..|...|.:..        |||||.||.
  Fly   407 SQLSTGVTNGGVSSPGVPSPGTGEPGSNLGPGCLTGGAGSSGAPENAFAGEANCDRWEFPRYRLK 471

  Rat   468 LGKPLGEGCFGQVVRAEALGMDSSRPDQTSTVAVKMLKDNASDKDLADLISEMEMMKLIGRHKNI 532
            ....||||.||||.|.||..::.:  :..:|||||.||::|::.|..||:||:|:||.:..|.|:
  Fly   472 FFNILGEGAFGQVWRCEATNINGN--EGITTVAVKTLKESATEVDRKDLLSELEVMKSLEPHINV 534

  Rat   533 INLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPALVSCAYQVAR 597
            ::|||.||.:.|.:||:||..:|.|:.:||:.|   .:............|:...|.|..||||:
  Fly   535 VHLLGCCTDKDPTFVILEYVNRGKLQTYLRSSR---AERHYGNTHGKSNVLTSCDLTSFMYQVAK 596

  Rat   598 GMQYLESRKCIHRDLAARNVLVTEDDVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFD 662
            ||.||.||..|||||||||:|:|:|...|:||||.||.|.....|::.|.|:||::|||.|:|:|
  Fly   597 GMDYLTSRGIIHRDLAARNILITDDHTCKVADFGFARDVITSKIYERKSEGKLPIRWMATESLYD 661

  Rat   663 RVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMERPPNCPSELYGLMRECWHA 727
            .:::.:||:||||||:|||.|||.:|||||...::...:|:|:|:|:|.:|..|||.:|..||..
  Fly   662 NIFSVKSDIWSFGILMWEIVTLGSTPYPGISAADVMRKVRDGYRLEKPEHCRRELYNIMYYCWSH 726

  Rat   728 APSQRPTFKQLVEALDKVLLAVSEEYLDL 756
            .|.:||.|.::::.||| ||....:|::|
  Fly   727 DPQERPLFAEIIQMLDK-LLHTEMDYIEL 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fgfr4XP_006253668.1 IG 40..108 CDD:214652 13/74 (18%)
IGc2 47..104 CDD:197706 11/63 (17%)
Ig 153..237 CDD:299845 21/95 (22%)
IG_like 158..237 CDD:214653 21/90 (23%)
IG_like 252..346 CDD:214653 13/103 (13%)
Ig3_FGFR-2 260..347 CDD:143266 10/96 (10%)
PKc_like 453..766 CDD:304357 138/312 (44%)
Pkinase_Tyr 466..742 CDD:285015 124/275 (45%)
Cad96CaNP_651349.1 Cadherin_repeat 65..164 CDD:206637 18/74 (24%)
STYKc 470..741 CDD:214568 124/275 (45%)
PTKc 474..742 CDD:270623 123/272 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

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