DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fgfr4 and htl

DIOPT Version :9

Sequence 1:XP_006253668.1 Gene:Fgfr4 / 25114 RGDID:2612 Length:801 Species:Rattus norvegicus
Sequence 2:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster


Alignment Length:705 Identity:279/705 - (39%)
Similarity:377/705 - (53%) Gaps:67/705 - (9%)


- Green bases have known domain annotations that are detailed below.


  Rat    99 LARGSMTVVHNLTLIMDDSLPSINNEDPKTLSSSS---SGHS-----------YLQQAPYWTHPQ 149
            :|.....:..:|.....:..|:|.|...::.:||:   .|.:           .:...|||.:|:
  Fly    43 MANSQEMIKDHLGARSQNKTPAITNNANQSSTSSADLDDGAADDDDNKADLPVNVSSKPYWRNPK 107

  Rat   150 RMEKKLHAVPAGNTVKFRCPAAGNPMPTIHWLKNGQAFHGENRIGGIRLRHQHWSLVMESVVPSD 214
            :| ..|...|:|:.:...|.|.|||.|.|.|.:||..   :...|...|:...|:|.||.:||.|
  Fly   108 KM-SFLQTRPSGSLLTLNCHALGNPEPNITWYRNGTV---DWTRGYGSLKRNRWTLTMEDLVPGD 168

  Rat   215 RGTYTCLVENSLGSIRYSYLLDVLERSPHRPILQAGLPANTTAVVGSNVELLCKVYSDAQPHIQW 279
            .|.|||.|.||||.||:...:.|.:|..|:|||..| |.|.|.||.|...:.||..||......|
  Fly   169 CGNYTCKVCNSLGCIRHDTQVIVSDRVNHKPILMTG-PLNLTLVVNSTGSMHCKYLSDLTSKKAW 232

  Rat   280 L---KHIVINGSSFGADGFPYVQVLKTTDINSSEVEVLYLRNVSAEDAGEYTCLAGNSIGLSYQS 341
            :   .|.:.|.|:             ...|.:.:.:.|...||..|..|.|||:..||:|.|..:
  Fly   233 IFVPCHGMTNCSN-------------NRSIIAEDKDQLDFVNVRMEQEGWYTCVESNSLGQSNST 284

  Rat   342 AWLTVLPEAEEEDLAWTTATSEARYTDII-LYVSGSLALVLLLLLAGVYH-RQAIHGHHSRQPV- 403
            |:|.|:.....  |....|:.....|..: ::|.|.|..:.:..|...|. |:..|....:|.: 
  Fly   285 AYLRVVRSLHV--LEAGVASGSLHSTSFVYIFVFGGLIFIFMTTLFVFYAIRKMKHEKVLKQRIE 347

  Rat   404 TVQKLSRFPLARQFSLESRSSGKSSLSLVRGVRLSSSGPPLLTG------LVSLDLPLDPLWEFP 462
            ||.:.::..:..:......|||.....::..||:......:|..      ....:.|||..||.|
  Fly   348 TVHQWTKKVIIFKPEGGGDSSGSMDTMIMPVVRIQKQRTTVLQNGNEPAPFNEYEFPLDSNWELP 412

  Rat   463 RDRLVLGKPLGEGCFGQVVRAEALGMDSSRPDQTSTVAVKMLKDNASDKDLADLISEMEMMKLIG 527
            |..||||..||||.||:||.||.         ..:.|||||:|:..:|.|:|.|:.|||:||:||
  Fly   413 RSHLVLGATLGEGAFGRVVMAEV---------NNAIVAVKMVKEGHTDDDIASLVREMEVMKIIG 468

  Rat   528 RHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPA----- 587
            ||.|||||||.|:|.||||||||||..|||::||...||.|.|...|   ||:.|.|.||     
  Fly   469 RHINIINLLGCCSQNGPLYVIVEYAPHGNLKDFLYKNRPFGRDQDRD---SSQPPPSPPAHVITE 530

  Rat   588 --LVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDDVMKIADFGLARGVHHIDYYKKTSNGRL 650
              |:..|:|:||||.||.||:|||||||||||||::|.|:|||||||||.:...|||:|.:||||
  Fly   531 KDLIKFAHQIARGMDYLASRRCIHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRL 595

  Rat   651 PVKWMAPEALFDRVYTHQSDVWSFGILLWEIFTLGGSPYPGI-PVEELFSLLREGHRMERPPNCP 714
            |:||||||:|.::.|..:|||||:|||||||.|.|..|||.| ..|||::.|..|.|||:|..|.
  Fly   596 PIKWMAPESLQEKFYDSKSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCS 660

  Rat   715 SELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAVSEEYLDLRLTFGPYSPNNGD 769
            ..:|.|||:|||.....||.|.::||.:|| ||...|:|||:.:......|:..|
  Fly   661 MNIYILMRQCWHFNADDRPPFTEIVEYMDK-LLQTKEDYLDVDIANLDTPPSTSD 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fgfr4XP_006253668.1 IG 40..108 CDD:214652 1/8 (13%)
IGc2 47..104 CDD:197706 1/4 (25%)
Ig 153..237 CDD:299845 33/83 (40%)
IG_like 158..237 CDD:214653 32/78 (41%)
IG_like 252..346 CDD:214653 29/96 (30%)
Ig3_FGFR-2 260..347 CDD:143266 24/89 (27%)
PKc_like 453..766 CDD:304357 175/320 (55%)
Pkinase_Tyr 466..742 CDD:285015 160/283 (57%)
htlNP_524394.2 Ig 112..191 CDD:299845 33/81 (41%)
IG_like 113..191 CDD:214653 32/80 (40%)
IG_like 205..289 CDD:214653 29/96 (30%)
PKc_like 404..692 CDD:304357 169/300 (56%)
STYKc 416..688 CDD:214568 160/283 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 326 1.000 Domainoid score I1150
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 465 1.000 Inparanoid score I1477
OMA 1 1.010 - - QHG50158
OrthoDB 1 1.010 - - D119660at33208
OrthoFinder 1 1.000 - - FOG0000923
OrthoInspector 1 1.000 - - mtm9075
orthoMCL 1 0.900 - - OOG6_100013
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X537
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.740

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