DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chrna5 and nAChRbeta1

DIOPT Version :9

Sequence 1:NP_058774.2 Gene:Chrna5 / 25102 RGDID:2347 Length:467 Species:Rattus norvegicus
Sequence 2:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster


Alignment Length:506 Identity:189/506 - (37%)
Similarity:285/506 - (56%) Gaps:88/506 - (17%)


- Green bases have known domain annotations that are detailed below.


  Rat    40 LSSAAKHEDSLFRDLFEDYERWVRPVEHLSDKIKIKFGLAISQLVDVDEKNQLMTTNVWLKQEWI 104
            |.||::.|:.|.||||..|.:.:|||::::.|:.::||||..||::|:||||:|.:||||:..|.
  Fly    21 LVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWY 85

  Rat   105 DVKLRWNPDDYGGIKIIRVPSDSLWIPDIVLFDNADGRFEGASTKTVVRY-NGTVTWTQPANYKS 168
            |.:|:|:..|||||.::|:|.|.:|.||||||:||||.:|......|:.| .|.|.|..||.|:|
  Fly    86 DYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQS 150

  Rat   169 SCTIDVTFFPFDLQNCSMKFGSWTYDGSQVDIILEDQD--VDRTDFFDNGEWEIMSA-------M 224
            |||||||:||||.|.|.|||||||::|.||.:.|.:..  ||.:|::.:|.|:|:..       .
  Fly   151 SCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYE 215

  Rat   225 GSKGNRTDSCCWYPYITYSFVIKRLPLFYTLFLIIPCIGLSFLTVVVFYLPSNEGEKISLCTSVL 289
            |...:.|::     .||:..:|:|..||||:.||:|.:.:|||.|:|||||:..|||::|..|:|
  Fly   216 GDSNHPTET-----DITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISIL 275

  Rat   290 VSLTVFLLVIEEIIPSSSKVIPLIGEYLVFTMIFVTLSIMVTVFAINIHHRSSSTHNAMAPWVRK 354
            :||.||||::.:|:|.:|.|:|||.:||:||.|..|:||:|||..||.:.|...||. |..::|.
  Fly   276 LSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHR-MPMYIRS 339

  Rat   355 IFLHKLPKLLCMR-------------------SHADRYFTQREE--------------------- 379
            ||||.||..|.|:                   :|....:....|                     
  Fly   340 IFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEVMELS 404

  Rat   380 ----------------AESGAGPKSRNTLEA------------ALDCIRYITRHVVKENDVREVV 416
                            .|.|.|...|...|:            |.:.:.:|..|:..|:...:..
  Fly   405 DLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTR 469

  Rat   417 EDWKFIAQVLDRMFLWTFLLVSIIGTLGLFV--PVIYKWA--NIIVPVHIG 463
            ||||::|.|:||:.|:.|.:|:..||:|:.:  |.|:::.  :.|:.::.|
  Fly   470 EDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDAPHIFEYVDQDRIIEIYRG 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chrna5NP_058774.2 LIC 41..448 CDD:273305 184/486 (38%)
Neur_chan_LBD 47..250 CDD:280998 96/212 (45%)
Neur_chan_memb 257..446 CDD:280999 82/256 (32%)
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 185/484 (38%)
Neur_chan_LBD 28..236 CDD:280998 96/212 (45%)
Neur_chan_memb 243..498 CDD:280999 81/255 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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