Sequence 1: | NP_434692.2 | Gene: | Chrna3 / 25101 | RGDID: | 2345 | Length: | 499 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_995675.1 | Gene: | nAChRalpha6 / 34304 | FlyBaseID: | FBgn0032151 | Length: | 523 | Species: | Drosophila melanogaster |
Alignment Length: | 517 | Identity: | 195/517 - (37%) |
---|---|---|---|
Similarity: | 291/517 - (56%) | Gaps: | 38/517 - (7%) |
- Green bases have known domain annotations that are detailed below.
Rat 6 LPPPLSMLMLVLMLLPAASASEAEH--RLFQYLFEDYNEIIRPVANVSHPVIIQFEVSMSQLVKV 68
Rat 69 DEVNQIMETNLWLKQIWNDYKLKWKPSDYQGVEFMRVPAEKIWKPDIVLYNNADGDFQVDDKTKA 133
Rat 134 LLKYTGEVTWIPPAIFKSSCKIDVTYFPFDYQNCTMKFGSWSYDKAKIDLVLIG-SSMNLKDYWE 197
Rat 198 SGEWAIIKAPGYKHEIKYNCCEEIYQDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSD 262
Rat 263 CGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFT---------------------- 305
Rat 306 -------MIFVTLSIVITVFVLNVHYRTPTTHTMPTWVKAVFLNLLPRVMFMTRPTSGEGDTPKT 363
Rat 364 RTFYGAELSNLNCFSRADSKSCKEGYPCQDGTCGYCHHRRVKISNFSANLTRSSSSESVDAVLSL 428
Rat 429 SALSPEIKEAIQSVKYIAENMKAQNVAKEIQDDWKYVAMVIDRIFLWVFILVCILGTAGLFL 490 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Chrna3 | NP_434692.2 | LIC | 24..490 | CDD:273305 | 188/497 (38%) |
Neur_chan_LBD | 29..235 | CDD:280998 | 97/208 (47%) | ||
Neur_chan_memb | 242..489 | CDD:280999 | 88/275 (32%) | ||
nAChRalpha6 | NP_995675.1 | LIC | 11..517 | CDD:273305 | 191/511 (37%) |
LGIC_ECD_nAChR | 55..236 | CDD:349798 | 83/180 (46%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |