DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chrna3 and nAChRalpha6

DIOPT Version :9

Sequence 1:NP_434692.2 Gene:Chrna3 / 25101 RGDID:2345 Length:499 Species:Rattus norvegicus
Sequence 2:NP_995675.1 Gene:nAChRalpha6 / 34304 FlyBaseID:FBgn0032151 Length:523 Species:Drosophila melanogaster


Alignment Length:517 Identity:195/517 - (37%)
Similarity:291/517 - (56%) Gaps:38/517 - (7%)


- Green bases have known domain annotations that are detailed below.


  Rat     6 LPPPLSMLMLVLMLLPAASASEAEH--RLFQYLFEDYNEIIRPVANVSHPVIIQFEVSMSQLVKV 68
            ||..||:.:|::.|.....:.:..|  ||..:|...||.:.|||||.|.|:.::|.:::.|::.|
  Fly     5 LPASLSLFVLLIFLAIIKESCQGPHEKRLLNHLLSTYNTLERPVANESEPLEVKFGLTLQQIIDV 69

  Rat    69 DEVNQIMETNLWLKQIWNDYKLKWKPSDYQGVEFMRVPAEKIWKPDIVLYNNADGDFQVDDKTKA 133
            ||.|||:.||.||...||||.|:|..::|.||:.:|:...|:||||:::||:||..|.....|..
  Fly    70 DEKNQILTTNAWLNLEWNDYNLRWNETEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTYHTNI 134

  Rat   134 LLKYTGEVTWIPPAIFKSSCKIDVTYFPFDYQNCTMKFGSWSYDKAKIDLVLIG-SSMNLKDYWE 197
            ::|:.|...::||.||||:||||:|:||||.|:|.||||||:||..::||||.. ...:|.|:..
  Fly   135 VVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLNSEDGGDLSDFIT 199

  Rat   198 SGEWAIIKAPGYKHEIKYNCCEEIYQDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSD 262
            :|||.::..||.|:.|.|.||.|.|.|||:::.|||..|:|..|||:||:|||.:.:|.|.||.|
  Fly   200 NGEWYLLAMPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD 264

  Rat   263 CGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFT---------------------- 305
            .|||:||.:::||||||||.::.|::|:||..:||||..:|.:                      
  Fly   265 SGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGVTILLSLTVFLNLVAETLPQVSDAIPLL 329

  Rat   306 -------MIFVTLSIVITVFVLNVHYRTPTTHTMPTWVKAVFLNLLPRVMFMTRPTSGEGDTPKT 363
                   |..|..|:|:||.|||.|:||...|.||.|:|:|||..||.::.|.||  |...|.||
  Fly   330 GTYFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWILRMGRP--GRKITRKT 392

  Rat   364 RTFYGAELSNLNCFSRADSKSCKEGYPCQDGTCGYCHHRRVKISNFSANLTRSSSSESVDAVLSL 428
             ......:..|....|:............|.........:..|.: ||:..|.::.|.....:..
  Fly   393 -ILLSNRMKELELKERSSKSLLANVLDIDDDFRHTISGSQTAIGS-SASFGRPTTVEEHHTAIGC 455

  Rat   429 SALSPEIKEAIQSVKYIAENMKAQNVAKEIQDDWKYVAMVIDRIFLWVFILVCILGTAGLFL 490
            :  ..::...::.:::|...|:..:...|:..|||:.|||:||..|.||.|..|:.|..:.|
  Fly   456 N--HKDLHLILKELQFITARMRKADDEAELIGDWKFAAMVVDRFCLIVFTLFTIIATVTVLL 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chrna3NP_434692.2 LIC 24..490 CDD:273305 188/497 (38%)
Neur_chan_LBD 29..235 CDD:280998 97/208 (47%)
Neur_chan_memb 242..489 CDD:280999 88/275 (32%)
nAChRalpha6NP_995675.1 LIC 11..517 CDD:273305 191/511 (37%)
LGIC_ECD_nAChR 55..236 CDD:349798 83/180 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.