DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru2 and Celf3

DIOPT Version :9

Sequence 1:NP_001036356.1 Gene:bru2 / 250811 FlyBaseID:FBgn0262475 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001276542.1 Gene:Celf3 / 78784 MGIID:1926034 Length:494 Species:Mus musculus


Alignment Length:619 Identity:239/619 - (38%)
Similarity:306/619 - (49%) Gaps:141/619 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 QPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQ 353
            :|||  ||:||||||:..:|..|:.:|||||.:..|.|::||.|.:.:||.|:||..|.:||:||
Mouse     3 EPDA--IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQ 65

  Fly   354 DALHNIKTLDGMHHPIQMKPADSENRNE-RKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ 417
            .|||..|||.||:.|||:||||||:|.| ||||||||.|:.|:.|||::|...|||:||||||..
Mouse    66 SALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 130

  Fly   418 AGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEKDQKKMQQIHAFCGINT 482
            .|.|||||||.|.|...|..||..||.|:|:.|.|:.||||||||:||:..::|||:....|:.:
Mouse   131 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFS 195

  Fly   483 PSGATAGAATPTINAATALIAAPPSAGRTNPSMAAALAAVPQVQQAGSAATA--PTTLVPLNSTT 545
            |.....||.:....|.....||..:|.....|..|.:|||.....|..:|..  .|.:.|.:.|:
Mouse   196 PIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAISANGLIATPITPSSGTS 260

  Fly   546 ALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLHGYGLSP----------AHYLP 600
                  ||           .|.||..:.|.|||..       ::||...|          |.|..
Mouse   261 ------TP-----------PAIAATPVSAIPAALG-------VNGYSPVPTQPTGQPAPDALYPN 301

  Fly   601 GLNFHHP-PENSAHHSQHSPGIGGASAASLSAAAATAASNPLGGAPPPTPTPTSSAGHAAGAGLL 664
            |:   || |:.:....:.:.|:...|.|.......:||.:|   |.|..|...:.||        
Mouse   302 GV---HPYPDEALSAERSAGGVPIMSQAHSWLVMLSAAQSP---AAPVDPLQQAYAG-------- 352

  Fly   665 AAPSMSMQNLVALLATPTAHHQLSLHHSSSSSGHNNGNSSATSGLHNQRLTYAAAPPPPPISTTY 729
                  ||:..|  |.|.|:                            .|...|.|.||.:    
Mouse   353 ------MQHYTA--AYPAAY----------------------------SLVAPAFPQPPAL---- 377

  Fly   730 NMPQLIGHTATPTQPGGSSQSLTFNALWPPNAADPYSSSLSGLTNGAAYGAASQPVTTSALQAAA 794
                      ...||             ||                        |......|...
Mouse   378 ----------VAQQP-------------PP------------------------PPQQQQQQQQQ 395

  Fly   795 AGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNP 859
            .....:|.|||||.|:|||||||||.|:::...|:|||:|:|||||:|:.||.||||||||:|||
Mouse   396 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNP 460

  Fly   860 HSANAAIQAMHGFQIGSKRLKVQLKRSKDAAKPY 893
            .||.||||||:|||||.|||||||||.|||.:||
Mouse   461 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru2NP_001036356.1 RRM1_CELF1_2_Bruno 294..375 CDD:241075 43/80 (54%)
RRM2_Bruno_like 381..461 CDD:241080 48/80 (60%)
RRM_SF 801..892 CDD:302621 66/90 (73%)
Celf3NP_001276542.1 RRM1_CELF3_4_5_6 2..88 CDD:410041 47/86 (55%)
RRM2_CELF3_4_5_6 94..174 CDD:410043 47/79 (59%)
PRK12323 <214..379 CDD:237057 53/252 (21%)
RRM3_CELF3_4_5_6 405..483 CDD:241083 56/77 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836402
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100683
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3223
SonicParanoid 1 1.000 - - X208
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.680

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