DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru2 and celf3a

DIOPT Version :9

Sequence 1:NP_001036356.1 Gene:bru2 / 250811 FlyBaseID:FBgn0262475 Length:893 Species:Drosophila melanogaster
Sequence 2:XP_021323804.1 Gene:celf3a / 57922 ZFINID:ZDB-GENE-000501-2 Length:458 Species:Danio rerio


Alignment Length:626 Identity:233/626 - (37%)
Similarity:307/626 - (49%) Gaps:193/626 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 DADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 355
            :||.||:|:||||:..:|..|:.:|||||.::.|.|::||.|.:.:||.|:||..|::||:||:|
Zfish     3 EADAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67

  Fly   356 LHNIKTLDGMHHPIQMKPADSENRNERKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQ 420
            ||..|||.||:.|||:||||||.|.:||||||||.|:.::||||::|...|:||||||||...|.
Zfish    68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGA 132

  Fly   421 SKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEKDQKKMQQIHAFCGINTPSG 485
            |||||||.:.:...|..||.|||.|:|:.|.|:.||||||||:||:..::|||:.:..|:.:|..
Zfish   133 SKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKERGIRRMQQVASQLGVISPMS 197

  Fly   486 ATAGAATPTINAAT-------ALIAAPPSAGRTNPSMAAALAAVPQVQQAGSAATAPTTLV--PL 541
            ...||    .||.|       ||:|   .:...:|  .|.:||| |:||.  ||..|::::  |:
Zfish   198 LHLGA----YNAYTQALVQQQALVA---QSAYLSP--VATVAAV-QMQQL--AALNPSSIIATPI 250

  Fly   542 NSTTALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLHGYGLSPAHYLPGLNFHH 606
                   ||:||:.:...|.                              |.|.           
Zfish   251 -------ASITPSSVCNCAV------------------------------GTST----------- 267

  Fly   607 PPENSAHHSQHSPGIGGASAASLSAAAATAASNPLGGAPPP------TPTPTSSAGHAAGAGLLA 665
            ||                          |.|:.|:...|||      .|.|.:..|.:|...|. 
Zfish   268 PP--------------------------TIAATPVPALPPPIAVNSYPPVPAAPNGQSASEALY- 305

  Fly   666 APSMSMQNLVALLATPTAHHQLSLHHSSSSSGHNNGNSSATSGLHNQRLTYAAAPPPPPISTTYN 730
                                                    |:|:|    .|.|..|         
Zfish   306 ----------------------------------------TNGVH----PYQAQSP--------- 317

  Fly   731 MPQLIGHTATPTQPGGSSQSLTFNALWPPNAADPYSSSLSGL-----TNGAAYGAASQPV---TT 787
                                          |.||...:.:|:     |..||||...||.   .|
Zfish   318 ------------------------------ALDPLQQAYTGMQHYTATYPAAYGLVGQPFPHQPT 352

  Fly   788 SALQAAAAGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFG 852
            ...|........:|.|||:|.|:|||||||||.|:::...|||||||:|||||:|:.||.|||||
Zfish   353 LVAQQPQQPQQLQQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFG 417

  Fly   853 FVSYDNPHSANAAIQAMHGFQIGSKRLKVQLKRSKDAAKPY 893
            |||:|||.||.||||||:|||||.|||||||||.|||.:||
Zfish   418 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru2NP_001036356.1 RRM1_CELF1_2_Bruno 294..375 CDD:241075 42/80 (53%)
RRM2_Bruno_like 381..461 CDD:241080 46/79 (58%)
RRM_SF 801..892 CDD:302621 67/90 (74%)
celf3aXP_021323804.1 RRM1_CELF3_4_5_6 2..88 CDD:241076 45/84 (54%)
RRM2_CELF3_4_5_6 93..173 CDD:241079 46/79 (58%)
Atrophin-1 <225..348 CDD:331285 49/285 (17%)
RRM3_CELF3_4_5_6 369..447 CDD:241083 57/77 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579916
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100683
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3223
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.680

Return to query results.
Submit another query.