DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bru2 and shep

DIOPT Version :9

Sequence 1:NP_001036356.1 Gene:bru2 / 250811 FlyBaseID:FBgn0262475 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster


Alignment Length:674 Identity:139/674 - (20%)
Similarity:232/674 - (34%) Gaps:208/674 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 QQQQ------QQQ----------------QQHPQILPVKYEYLENLTSSGATSGAIAATTTFTGA 134
            ||||      |||                ||.|..:|....|     |:|::|.|.||..|    
  Fly    13 QQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPRSQNY-----SNGSSSSAAAAPLT---- 68

  Fly   135 AKSFHPYLRPTGSGSNSNNSIAALSTTTAATAAKMSTTLFETLLHNQINSSPIALPAATAIAAIS 199
                            |.::......|.:|.|.|.:.......:     :||.|..|..|:||.:
  Fly    69 ----------------SRSAFPGAPLTASAVALKGALPQRPPAM-----TSPAAAAAGAALAAGA 112

  Fly   200 AAATAATATPGTAATAAAAAAAAPSTQLNSSINSRTSLGDQGGAI----VVVTPAP--------- 251
            ....||:.||...|.||||||||.:.|  ::......|.....|.    ...|||.         
  Fly   113 PYRGAASWTPQGYAPAAAAAAAAVAQQ--AAYRYTAPLPQPAYAAYTPHTATTPATTTVSFLSQP 175

  Fly   252 ----------PVAAPP--TGGPNRNQSPTRDCSVKMELMESTSPD-------SIKDQ-----PDA 292
                      |.||.|  |...:.:.:.::..::...|..:|:.:       ::::|     ...
  Fly   176 VDYYWYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTSLSNTTNTNTNMGPNGTVQNQNQQGGEQL 240

  Fly   293 DNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDALH 357
            ....:::..:.:...:..|..|..|:|.:.:...:.||.|:..:|..||.:.....|..|     
  Fly   241 SKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECA----- 300

  Fly   358 NIKTLDGMHHPIQMKPADSENRNERKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSK 422
             :|.|.|  ..:|.:.|..:.::...|::..|...:.|.|:..:.:.:|.:....:||||...||
  Fly   301 -VKGLQG--KGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSK 362

  Fly   423 GCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFAD-TQKEKDQKKMQQIHAFCGINTPSGA 486
            |..|....:::.....|: :....|:.|...||:||||| ..|:|:..|                
  Fly   363 GVGFARMESREKCEQIIQ-MFNGNTIPGAKDPLLVKFADGGPKKKNLFK---------------- 410

  Fly   487 TAGAATPTINAATALIAAPPSAGRTNPSMAAALAAVPQVQQAGSAATAPTTL-VPLNSTTALSAS 550
                 ||..||         .|.|...:....:|..|.:||.|.:....|.: ||.:..:|    
  Fly   411 -----TPDPNA---------RAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSA---- 457

  Fly   551 LTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLHGYGLSPAHYLPGLNFHHPPENSAHHS 615
                                               .|:.||.::.:.::||.......:.:::..
  Fly   458 -----------------------------------PQVGGYPVAGSQWIPGYMMTQVDDQTSYSP 487

  Fly   616 QH-----SPGIGGAS------------AASLSAAAATA----------ASNPLGG---------- 643
            |:     :|.:|..|            ..|:..:..|.          |:..:|.          
  Fly   488 QYMQMAAAPPLGVTSYKPEAVNQVQPRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYY 552

  Fly   644 APPPTPTPTSSAGHAAGAGLLAAP 667
            |||||..||.....:..|...|:|
  Fly   553 APPPTIIPTMPMTDSEQASTAASP 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru2NP_001036356.1 RRM1_CELF1_2_Bruno 294..375 CDD:241075 16/80 (20%)
RRM2_Bruno_like 381..461 CDD:241080 21/79 (27%)
RRM_SF 801..892 CDD:302621
shepNP_001246636.1 RRM1_MSSP 243..313 CDD:240689 16/77 (21%)
RRM2_MSSP 322..400 CDD:240690 21/78 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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