DRSC/TRiP Functional Genomics Resources

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Protein Alignment bru2 and Celf1

DIOPT Version :9

Sequence 1:NP_001036356.1 Gene:bru2 / 250811 FlyBaseID:FBgn0262475 Length:893 Species:Drosophila melanogaster
Sequence 2:XP_038961339.1 Gene:Celf1 / 362160 RGDID:1307721 Length:514 Species:Rattus norvegicus


Alignment Length:647 Identity:269/647 - (41%)
Similarity:344/647 - (53%) Gaps:173/647 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 CSVKMELMESTSPDSIK--------DQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVL 327
            ||:      ::||.|.|        ||||.|.|||||||:|:||.|..||::|||:|.|:.:|:|
  Rat    17 CSL------NSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINIL 75

  Fly   328 RDKVTS--ISRGCCFVTYYTRKAALRAQDALHNIKTLDGMHHPIQMKPADSENRN---ERKLFVG 387
            ||:..:  .|:||||||:|||||||.||:||||:|.|.||||||||||||||..|   :||||:|
  Rat    76 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIG 140

  Fly   388 MLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCS 452
            |::||.||.|:|.:|:..|.||||.:||...|.|:|||||||.|:..|..||||:||:|||||||
  Rat   141 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCS 205

  Fly   453 APLVVKFADTQKEKDQKKMQQIHAFCGINTPSGATAGAATPTINAATALIAAPPSAGRTNPSMAA 517
            :|:|||||||||:|:||:|.|                                            
  Rat   206 SPMVVKFADTQKDKEQKRMAQ-------------------------------------------- 226

  Fly   518 ALAAVPQVQQAGSAATAPTTLVPLNSTTALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHL 582
               .:.|..|..|||:....|..||       :|.|..|                      |.:|
  Rat   227 ---QLQQQMQQISAASVWGNLAGLN-------TLGPQYL----------------------ALYL 259

  Fly   583 QLYQQLHGYG----LSPAHYLPGLNFHHPPENSAHHSQHSPGIGGASAASLSAAAATAASNPLG- 642
            ||.||....|    ||..|.:.|||        |...|        :.|:|:|||:.|.:.|.| 
  Rat   260 QLLQQTANSGNLNTLSSLHPMGGLN--------AMQLQ--------NLAALAAAASAAQNTPSGT 308

  Fly   643 ----GAPPPTPTPTSSAGHAAGAGLLAAPSMSMQNLVALLATPTAHHQLSLHHSSSSSGHNNGNS 703
                .:..|....|||||        ::||.|..|.|..:|:..|...|    :.:::|.|.|:.
  Rat   309 NALTTSSSPLSVLTSSAG--------SSPSSSSSNSVNPIASLGALQTL----AGATAGLNVGSL 361

  Fly   704 SATSGLHNQRLTYAAAPPPPPISTTYNMPQLIGHTATPTQPGGSSQSLTFNALWPPNAADPYSSS 768
            :..:.|:..                      :|.:......|.:.::||              .:
  Rat   362 AGMAALNGG----------------------LGSSGLSNGTGSTMEALT--------------QA 390

  Fly   769 LSGLTNGAAYGAASQPV--TTSALQAAAAGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTFLPF 831
            .||:..   |.||:.|.  ..:.|...:.|..|.|.|||:|:|||||||||||.|.||...|:||
  Rat   391 YSGIQQ---YAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPF 452

  Fly   832 GNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKRLKVQLKRSKDAAKPY 893
            |||:||||||||||||||||||||||||.||.||||:|:|||||.|||||||||||:.:|||
  Rat   453 GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bru2NP_001036356.1 RRM1_CELF1_2_Bruno 294..375 CDD:241075 54/82 (66%)
RRM2_Bruno_like 381..461 CDD:241080 49/79 (62%)
RRM_SF 801..892 CDD:302621 72/90 (80%)
Celf1XP_038961339.1 RRM1_CELF1_2_Bruno 42..125 CDD:410040 54/82 (66%)
RRM2_CELF1_2 134..214 CDD:410042 49/79 (62%)
RRM3_CELF1_2 422..513 CDD:241082 72/90 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340070
Domainoid 1 1.000 97 1.000 Domainoid score I7060
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24012
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.810

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